Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	256586
Gene name	LysM domain containing 2
Gene symbol	LYSMD2
Synonyms (NCBI Gene)	-
Chromosome	15
Chromosome location	15q21.2

121

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miRTarBase ID	miRNA	Experiments
MIRT1124059	hsa-miR-103a	CLIP-seq
MIRT1124060	hsa-miR-107	CLIP-seq
MIRT1124061	hsa-miR-1184	CLIP-seq
MIRT1124062	hsa-miR-130a	CLIP-seq
MIRT1124063	hsa-miR-130b	CLIP-seq
MIRT1124064	hsa-miR-148a	CLIP-seq
MIRT1124065	hsa-miR-148b	CLIP-seq
MIRT1124066	hsa-miR-152	CLIP-seq
MIRT1124067	hsa-miR-214	CLIP-seq
MIRT1124068	hsa-miR-23a	CLIP-seq
MIRT1124069	hsa-miR-23b	CLIP-seq
MIRT1124070	hsa-miR-23c	CLIP-seq
MIRT1124071	hsa-miR-301a	CLIP-seq
MIRT1124072	hsa-miR-301b	CLIP-seq
MIRT1124073	hsa-miR-3117-5p	CLIP-seq
MIRT1124074	hsa-miR-3120-3p	CLIP-seq
MIRT1124075	hsa-miR-3123	CLIP-seq
MIRT1124076	hsa-miR-3129-3p	CLIP-seq
MIRT1124077	hsa-miR-3154	CLIP-seq
MIRT1124078	hsa-miR-3166	CLIP-seq
MIRT1124079	hsa-miR-34b	CLIP-seq
MIRT1124080	hsa-miR-3619-5p	CLIP-seq
MIRT1124081	hsa-miR-3658	CLIP-seq
MIRT1124082	hsa-miR-3666	CLIP-seq
MIRT1124083	hsa-miR-3925-5p	CLIP-seq
MIRT1124084	hsa-miR-3927	CLIP-seq
MIRT1124085	hsa-miR-3976	CLIP-seq
MIRT1124086	hsa-miR-4276	CLIP-seq
MIRT1124087	hsa-miR-4282	CLIP-seq
MIRT1124088	hsa-miR-4295	CLIP-seq
MIRT1124089	hsa-miR-4307	CLIP-seq
MIRT1124090	hsa-miR-4320	CLIP-seq
MIRT1124091	hsa-miR-4418	CLIP-seq
MIRT1124092	hsa-miR-4426	CLIP-seq
MIRT1124093	hsa-miR-4471	CLIP-seq
MIRT1124094	hsa-miR-454	CLIP-seq
MIRT1124095	hsa-miR-4647	CLIP-seq
MIRT1124096	hsa-miR-4650-3p	CLIP-seq
MIRT1124097	hsa-miR-4662b	CLIP-seq
MIRT1124098	hsa-miR-4775	CLIP-seq
MIRT1124099	hsa-miR-509-3-5p	CLIP-seq
MIRT1124100	hsa-miR-509-5p	CLIP-seq
MIRT1124101	hsa-miR-5096	CLIP-seq
MIRT1124102	hsa-miR-520d-5p	CLIP-seq
MIRT1124103	hsa-miR-524-5p	CLIP-seq
MIRT1124104	hsa-miR-584	CLIP-seq
MIRT1124105	hsa-miR-590-3p	CLIP-seq
MIRT1124106	hsa-miR-633	CLIP-seq
MIRT1124107	hsa-miR-656	CLIP-seq
MIRT1124108	hsa-miR-659	CLIP-seq
MIRT1124109	hsa-miR-761	CLIP-seq
MIRT1124110	hsa-miR-891b	CLIP-seq
MIRT1124111	hsa-miR-153	CLIP-seq
MIRT1124068	hsa-miR-23a	CLIP-seq
MIRT1124069	hsa-miR-23b	CLIP-seq
MIRT1124070	hsa-miR-23c	CLIP-seq
MIRT1124074	hsa-miR-3120-3p	CLIP-seq
MIRT1124112	hsa-miR-448	CLIP-seq
MIRT1124101	hsa-miR-5096	CLIP-seq
MIRT1124059	hsa-miR-103a	CLIP-seq
MIRT1124060	hsa-miR-107	CLIP-seq
MIRT1124061	hsa-miR-1184	CLIP-seq
MIRT1124062	hsa-miR-130a	CLIP-seq
MIRT1124063	hsa-miR-130b	CLIP-seq
MIRT1124064	hsa-miR-148a	CLIP-seq
MIRT1124065	hsa-miR-148b	CLIP-seq
MIRT1124066	hsa-miR-152	CLIP-seq
MIRT1124067	hsa-miR-214	CLIP-seq
MIRT1124071	hsa-miR-301a	CLIP-seq
MIRT1124072	hsa-miR-301b	CLIP-seq
MIRT1124074	hsa-miR-3120-3p	CLIP-seq
MIRT1124076	hsa-miR-3129-3p	CLIP-seq
MIRT2035097	hsa-miR-3200-3p	CLIP-seq
MIRT1124079	hsa-miR-34b	CLIP-seq
MIRT1124080	hsa-miR-3619-5p	CLIP-seq
MIRT1124082	hsa-miR-3666	CLIP-seq
MIRT1124086	hsa-miR-4276	CLIP-seq
MIRT1124088	hsa-miR-4295	CLIP-seq
MIRT1124091	hsa-miR-4418	CLIP-seq
MIRT1124093	hsa-miR-4471	CLIP-seq
MIRT1124094	hsa-miR-454	CLIP-seq
MIRT2035098	hsa-miR-4659a-5p	CLIP-seq
MIRT2035099	hsa-miR-4659b-5p	CLIP-seq
MIRT2035100	hsa-miR-4776-3p	CLIP-seq
MIRT1124099	hsa-miR-509-3-5p	CLIP-seq
MIRT1124100	hsa-miR-509-5p	CLIP-seq
MIRT1124109	hsa-miR-761	CLIP-seq
MIRT1124110	hsa-miR-891b	CLIP-seq
MIRT1124059	hsa-miR-103a	CLIP-seq
MIRT1124060	hsa-miR-107	CLIP-seq
MIRT1124061	hsa-miR-1184	CLIP-seq
MIRT1124062	hsa-miR-130a	CLIP-seq
MIRT1124063	hsa-miR-130b	CLIP-seq
MIRT1124064	hsa-miR-148a	CLIP-seq
MIRT1124065	hsa-miR-148b	CLIP-seq
MIRT1124066	hsa-miR-152	CLIP-seq
MIRT1124067	hsa-miR-214	CLIP-seq
MIRT1124071	hsa-miR-301a	CLIP-seq
MIRT1124072	hsa-miR-301b	CLIP-seq
MIRT1124076	hsa-miR-3129-3p	CLIP-seq
MIRT2265516	hsa-miR-3155	CLIP-seq
MIRT2265517	hsa-miR-3155b	CLIP-seq
MIRT1124079	hsa-miR-34b	CLIP-seq
MIRT1124080	hsa-miR-3619-5p	CLIP-seq
MIRT1124082	hsa-miR-3666	CLIP-seq
MIRT1124084	hsa-miR-3927	CLIP-seq
MIRT1124086	hsa-miR-4276	CLIP-seq
MIRT1124088	hsa-miR-4295	CLIP-seq
MIRT1124091	hsa-miR-4418	CLIP-seq
MIRT1124093	hsa-miR-4471	CLIP-seq
MIRT1124094	hsa-miR-454	CLIP-seq
MIRT1124096	hsa-miR-4650-3p	CLIP-seq
MIRT2265518	hsa-miR-484	CLIP-seq
MIRT1124099	hsa-miR-509-3-5p	CLIP-seq
MIRT1124100	hsa-miR-509-5p	CLIP-seq
MIRT1124109	hsa-miR-761	CLIP-seq
MIRT1124110	hsa-miR-891b	CLIP-seq
MIRT2035097	hsa-miR-3200-3p	CLIP-seq
MIRT2035098	hsa-miR-4659a-5p	CLIP-seq
MIRT2035099	hsa-miR-4659b-5p	CLIP-seq
MIRT2035100	hsa-miR-4776-3p	CLIP-seq

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GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	32296183

MIM	HGNC	e!Ensembl
HGNC	N/A	HGNC

Q8IV50

Protein name

LysM and putative peptidoglycan-binding domain-containing protein 2

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF01476	LysM	73 → 116	LysM domain	Domain

Sequence

MADSSPALSLREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASVRA
PLGAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISE
KPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFL
QRLDLQIKLSTQAAKKLKEESRDEESPYATSLYHS

Sequence length

215

Interactions

View interactions

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (1)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
MAJOR DEPRESSIVE DISORDER	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

LYSMD2 (LysM domain containing 2)