Gene Gene information from NCBI Gene database.
Entrez ID 2563
Gene name Gamma-aminobutyric acid type A receptor subunit delta
Gene symbol GABRD
Synonyms (NCBI Gene)
EIG10EJM7GABAARdeltaGEFSP5
Chromosome 1
Chromosome location 1p36.33
Summary Gamma-aminobutyric acid (GABA) is the major inhibitory neurotransmitter in the mammalian brain where it acts at GABA-A receptors, which are ligand-gated chloride channels. Chloride conductance of these channels can be modulated by agents such as benzodiaz
SNPs SNP information provided by dbSNP.
4
SNP ID Visualize variation Clinical significance Consequence
rs41307846 G>A Benign, likely-benign, risk-factor Coding sequence variant, missense variant
rs121434580 A>C Risk-factor Missense variant, coding sequence variant
rs147463074 C>T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs368961588 C>T Conflicting-interpretations-of-pathogenicity Intron variant
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
40
GO ID Ontology Definition Evidence Reference
GO:0004888 Function Transmembrane signaling receptor activity IEA
GO:0004890 Function GABA-A receptor activity IBA
GO:0004890 Function GABA-A receptor activity IEA
GO:0004890 Function GABA-A receptor activity TAS 2176788
GO:0005216 Function Monoatomic ion channel activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
137163 4084 ENSG00000187730
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O14764
Protein name Gamma-aminobutyric acid receptor subunit delta (GABA(A) receptor subunit delta) (GABAAR subunit delta)
Protein function Delta subunit of the heteropentameric ligand-gated chloride channel gated by gamma-aminobutyric acid (GABA), a major inhibitory neurotransmitter in the brain (PubMed:35355020). GABA-gated chloride channels, also named GABA(A) receptors (GABAAR),
PDB 7QN5 , 7QN6 , 7QN7 , 7QN8 , 7QN9 , 7QNC , 7QND
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02931 Neur_chan_LBD 43 247 Neurotransmitter-gated ion-channel ligand binding domain Family
PF02932 Neur_chan_memb 254 408 Neurotransmitter-gated ion-channel transmembrane region Family
Sequence
Sequence length 452
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Neuroactive ligand-receptor interaction
Retrograde endocannabinoid signaling
GABAergic synapse
Morphine addiction
Nicotine addiction
 
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
31
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Epilepsy, idiopathic generalized, susceptibility to, 10 Pathogenic; Likely pathogenic rs1659014112, rs2525640747 RCV002470247
RCV005870078
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
GABRD-Related Disorders Likely pathogenic rs2525640747 RCV006269801
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Idiopathic generalized epilepsy Likely pathogenic rs2525644185 RCV002979282
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
1P36 DELETION SYNDROME Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenocortical carcinoma, hereditary Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism spectrum disorder Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, HEPATOCELLULAR CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
1p36 deletion syndrome 1p36 deletion syndrome Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenocortical Carcinoma Adrenocortical carcinoma Pubtator 33187258 Associate
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only
Albinism, Ocular Ocular albinism HPO_DG
★☆☆☆☆
Found in Text Mining only
Aneurysm of aortic arch Aneurysm Of Aortic Arch HPO_DG
★☆☆☆☆
Found in Text Mining only
Annular pancreas Annular pancreas HPO_DG
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
Autistic behavior Autism HPO_DG
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism BEFREE 24249596, 25124326
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism Pubtator 25124326 Associate
★☆☆☆☆
Found in Text Mining only