Gene Gene information from NCBI Gene database.
Entrez ID 2517
Gene name Alpha-L-fucosidase 1
Gene symbol FUCA1
Synonyms (NCBI Gene)
FUCA
Chromosome 1
Chromosome location 1p36.11
Summary The protein encoded by this gene is a lysosomal enzyme involved in the degradation of fucose-containing glycoproteins and glycolipids. Mutations in this gene are associated with fucosidosis (FUCA1D), which is an autosomal recessive lysosomal storage disea
SNPs SNP information provided by dbSNP.
17
SNP ID Visualize variation Clinical significance Consequence
rs80358195 C>A,G Pathogenic Missense variant, coding sequence variant, stop gained
rs80358196 G>A Pathogenic 5 prime UTR variant, genic upstream transcript variant, stop gained, upstream transcript variant, coding sequence variant
rs80358197 C>T Pathogenic Coding sequence variant, stop gained
rs80358198 G>A,T Benign, pathogenic Synonymous variant, coding sequence variant, stop gained
rs80358199 A>C Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
128
miRTarBase ID miRNA Experiments Reference
MIRT727636 hsa-miR-30a-5p HITS-CLIP 22473208
MIRT727635 hsa-miR-30b-5p HITS-CLIP 22473208
MIRT727634 hsa-miR-30c-5p HITS-CLIP 22473208
MIRT727632 hsa-miR-30d-5p HITS-CLIP 22473208
MIRT727633 hsa-miR-30e-5p HITS-CLIP 22473208
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
25
GO ID Ontology Definition Evidence Reference
GO:0004560 Function Alpha-L-fucosidase activity IBA
GO:0004560 Function Alpha-L-fucosidase activity IDA 19666478
GO:0004560 Function Alpha-L-fucosidase activity IEA
GO:0004560 Function Alpha-L-fucosidase activity TAS 4074382, 11698403
GO:0005515 Function Protein binding IPI 32296183
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
612280 4006 ENSG00000179163
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P04066
Protein name Tissue alpha-L-fucosidase (EC 3.2.1.51) (Alpha-L-fucosidase I) (Alpha-L-fucoside fucohydrolase 1) (Alpha-L-fucosidase 1)
Protein function Alpha-L-fucosidase is responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.
PDB 7PLS , 7PM4
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01120 Alpha_L_fucos 24 367 Alpha-L-fucosidase Domain
PF16757 Fucosidase_C 378 463 Alpha-L-fucosidase C-terminal domain Domain
Sequence
Sequence length 466
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Other glycan degradation
Lysosome
  Neutrophil degranulation
Reactions specific to the complex N-glycan synthesis pathway
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
18
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the nervous system Likely pathogenic; Pathogenic rs1639468949 RCV001814299
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
FUCA1-related disorder Likely pathogenic; Pathogenic rs864309551, rs776845108 RCV003407716
RCV003966337
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Fucosidosis Pathogenic; Likely pathogenic rs587779398, rs587779399, rs1639669672, rs1186488065, rs2148446020, rs997047045, rs118204450, rs80358195, rs1570679652, rs80358196, rs80358197, rs80358198, rs2521745894, rs774846977, rs80358199
View all (46 more)
RCV000087085
RCV000087086
RCV001781138
RCV002541310
RCV001972670
View all (59 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Intellectual disability Pathogenic rs764863416 RCV001251771
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL NEUROLOGIC ANOMALIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Anaplastic thyroid carcinoma Anaplastic thyroid cancer BEFREE 28404918
★☆☆☆☆
Found in Text Mining only
Angiokeratoma Angiokeratoma HPO_DG
★☆☆☆☆
Found in Text Mining only
Anhidrosis Anhidrosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Autoimmune Diseases Autoimmune Diseases BEFREE 28808940
★☆☆☆☆
Found in Text Mining only
Body Weight Body weight Pubtator 23839870 Associate
★☆☆☆☆
Found in Text Mining only
Brachycephaly Brachycephaly HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 29632639
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 26204487 Associate
★☆☆☆☆
Found in Text Mining only
Carotid Stenosis Carotid artery stenosis Pubtator 21607540 Associate
★☆☆☆☆
Found in Text Mining only
Cerebral atrophy Cerebral Atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only