Gene Gene information from NCBI Gene database.
Entrez ID 2516
Gene name Nuclear receptor subfamily 5 group A member 1
Gene symbol NR5A1
Synonyms (NCBI Gene)
AD4BPELPFTZ1FTZF1POF7SF-1SF1SPGF8SRXX4SRXY3hSF-1
Chromosome 9
Chromosome location 9q33.3
Summary The protein encoded by this gene is a transcriptional activator involved in sex determination. The encoded protein binds DNA as a monomer. Defects in this gene are a cause of XY sex reversal with or without adrenal failure as well as adrenocortical insuff
SNPs SNP information provided by dbSNP.
32
SNP ID Visualize variation Clinical significance Consequence
rs104894118 C>A,T Pathogenic Coding sequence variant, missense variant
rs104894119 C>T Pathogenic Coding sequence variant, missense variant
rs104894120 A>T Pathogenic Coding sequence variant, missense variant
rs104894123 G>A,T Pathogenic Coding sequence variant, synonymous variant, stop gained
rs104894124 C>T Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
53
miRTarBase ID miRNA Experiments Reference
MIRT1192973 hsa-miR-1197 CLIP-seq
MIRT1192974 hsa-miR-1207-5p CLIP-seq
MIRT1192975 hsa-miR-1827 CLIP-seq
MIRT1192976 hsa-miR-1909 CLIP-seq
MIRT1192977 hsa-miR-1910 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
6
Transcription factor Regulation Reference
NR0B1 Repression 11990799
SOX9 Activation 11875113
SOX9 Unknown 24591553
SP1 Unknown 9013759
USF2 Unknown 18165439
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
72
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin ISA
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA 23610160
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
184757 7983 ENSG00000136931
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q13285
Protein name Steroidogenic factor 1 (SF-1) (STF-1) (hSF-1) (Adrenal 4-binding protein) (Fushi tarazu factor homolog 1) (Nuclear receptor subfamily 5 group A member 1) (Steroid hormone receptor Ad4BP)
Protein function Transcriptional activator. Essential for sexual differentiation and formation of the primary steroidogenic tissues (PubMed:27378692). Binds to the Ad4 site found in the promoter region of steroidogenic P450 genes such as CYP11A, CYP11B and CYP21
PDB 1YOW , 1ZDT , 4QJR , 4QK4 , 7KHT , 8DAF
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00105 zf-C4 11 80 Zinc finger, C4 type (two domains) Domain
PF00104 Hormone_recep 250 442 Ligand-binding domain of nuclear hormone receptor Domain
Tissue specificity TISSUE SPECIFICITY: High expressed in the adrenal cortex, the ovary, the testis, and the spleen (PubMed:9177385). {ECO:0000269|PubMed:9177385}.
Sequence
MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT
QRKRCPFCRFQKCLTVGMRL
EAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL
ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPL
AGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQV
RARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQN
CWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLA
LQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLL
LCLVEVRALSMQAKEYLYHKHL
GNEMPRNNLLIEMLQAKQT
Sequence length 461
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cortisol synthesis and secretion
Cushing syndrome
  Nuclear Receptor transcription pathway
SUMOylation of intracellular receptors
Transcriptional regulation of pluripotent stem cells
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
29
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
46,XX sex reversal 4 Pathogenic rs1832447335, rs104894119 RCV001333321
RCV000490544
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
46,XY disorder of sex development Pathogenic; Likely pathogenic rs2131286914, rs2131289687, rs2131289982, rs1564150329, rs2131289973, rs2131289701, rs2131279850, rs866712684, rs2538665084, rs2538683985, rs2538673493, rs2538674045, rs2538676475, rs2538683958, rs2538687051
View all (13 more)
RCV001389645
RCV001380659
RCV001389147
RCV001919035
RCV001960405
View all (23 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
46,XY partial gonadal dysgenesis Pathogenic rs2131277756 RCV002254533
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
46,XY sex reversal 3 Pathogenic; Likely pathogenic rs2131289685, rs1832458239, rs2131289790, rs2131290040, rs1832496590, rs754336683, rs2131289973, rs145936761, rs866712684, rs2131290009, rs2131277629, rs2131277648, rs2131279852, rs2538687191, rs863224904
View all (24 more)
RCV004594362
RCV001726609
RCV001823017
RCV002275228
RCV002275229
View all (34 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
46 XX GONADAL DYSGENESIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
46,XX OVOTESTICULAR DISORDER OF SEX DEVELOPMENT Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
46,XX SEX REVERSAL 1 GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
46,XY COMPLETE GONADAL DYSGENESIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
46, XX Disorders of Sex Development 46, XX Disorders of Sex Development BEFREE 29393271, 30350900
★☆☆☆☆
Found in Text Mining only
46, XX Testicular Disorders of Sex Development 46, XX Gonadal Sex Reversal ORPHANET_DG 27490115
★☆☆☆☆
Found in Text Mining only
46, XX Testicular Disorders of Sex Development 46, XX Gonadal Sex Reversal BEFREE 30739115
★☆☆☆☆
Found in Text Mining only
46, XY Disorders of Sex Development 46, XY disorder of sex development BEFREE 17200175, 17694559, 18987494, 19246354, 19318730, 19439508, 20595937, 20861607, 20887963, 21163476, 21654157, 22028768, 22474171, 22549935, 22909003
View all (23 more)
★☆☆☆☆
Found in Text Mining only
46, XY Disorders of Sex Development 46, XY disorder of sex development CTD_human_DG
★☆☆☆☆
Found in Text Mining only
46,XX gonadal dysgenesis 46, XX gonadal dysgenesis Orphanet
★☆☆☆☆
Found in Text Mining only
46,XX ovotesticular disorder of sex development 46, XX ovotesticular disorder of sex development Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
46,XX SEX REVERSAL 4 46, XX Gonadal Sex Reversal UNIPROT_DG 27378692, 27490115, 27610946, 27855412
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
46,XX SEX REVERSAL 4 46, XX Gonadal Sex Reversal CLINVAR_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
46,XX testicular disorder of sex development 46, XX Gonadal Sex Reversal Orphanet
★☆☆☆☆
Found in Text Mining only