Gene Gene information from NCBI Gene database.
Entrez ID 24145
Gene name Pannexin 1
Gene symbol PANX1
Synonyms (NCBI Gene)
MRS1OOMD7OZEMA7PX1UNQ2529
Chromosome 11
Chromosome location 11q21
Summary The protein encoded by this gene belongs to the innexin family. Innexin family members are the structural components of gap junctions. This protein and pannexin 2 are abundantly expressed in central nerve system (CNS) and are coexpressed in various neuron
SNPs SNP information provided by dbSNP.
4
SNP ID Visualize variation Clinical significance Consequence
rs1212949833 G>C,T Pathogenic Missense variant, coding sequence variant
rs1591499598 CGGAGCCCA>- Pathogenic Genic upstream transcript variant, coding sequence variant, 5 prime UTR variant, inframe deletion
rs1591529130 A>G Pathogenic Coding sequence variant, missense variant
rs1591529258 C>T Pathogenic Coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
187
miRTarBase ID miRNA Experiments Reference
MIRT001433 hsa-miR-16-5p pSILAC 18668040
MIRT004125 hsa-miR-192-5p Microarray 16822819
MIRT021301 hsa-miR-125a-5p Sequencing 20371350
MIRT025607 hsa-miR-10a-5p Sequencing 20371350
MIRT004125 hsa-miR-192-5p Microarray 19074876
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
55
GO ID Ontology Definition Evidence Reference
GO:0002020 Function Protease binding IEA
GO:0002931 Process Response to ischemia IEA
GO:0003779 Function Actin binding IEA
GO:0005102 Function Signaling receptor binding IPI 17036048
GO:0005198 Function Structural molecule activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608420 8599 ENSG00000110218
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96RD7
Protein name Pannexin-1 (PANX1) [Cleaved into: Caspase-activated pannexin-1 (Caspase-activated PANX1)]
Protein function Ion channel involved in a variety of physiological functions such as blood pressure regulation, apoptotic cell clearance and oogenesis (PubMed:15304325, PubMed:16908669, PubMed:20829356, PubMed:20944749, PubMed:30918116). Forms anion-selective c
PDB 6LTN , 6LTO , 6M02 , 6M66 , 6M67 , 6M68 , 6V6D , 6WBF , 6WBG , 6WBI , 6WBK , 6WBL , 6WBM , 6WBN , 7DWB , 7F8J , 7F8N , 7F8O , 7WSV , 8GTS , 8GTT , 8GYO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00876 Innexin 33 263 Innexin Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed (PubMed:30918116). Highest expression is observed in oocytes and brain (PubMed:30918116). Detected at very low levels in sperm cells (PubMed:30918116). {ECO:0000269|PubMed:30918116}.
Sequence
MAIAQLATEYVFSDFLLKEPTEPKFKGLRLELAVDKMVTCIAVGLPLLLISLAFAQEISI
GTQISCFSPSSFSWRQAAFVDSYCWAAVQQKNSLQSESGNLPLWLHKFFPYILLLFAILL
YLPPLFWRFAAAPHICSDLKFIMEELDKVYNRAIKAAKSARDLDMRDGACSVPGVTENLG
QSLWEVSESHFKYPIVEQYLKTKKNSNNLIIKYISCRLLTLIIILLACIYLGYYFSLSSL
SDEFVCSIKSGILRNDSTVPDQF
QCKLIAVGIFQLLSVINLVVYVLLAPVVVYTLFVPFR
QKTDVLKVYEILPTFDVLHFKSEGYNDLSLYNLFLEENISEVKSYKCLKVLENIKSSGQG
IDPMLLLTNLGMIKMDVVDGKTPMSAEMREEQGNQTAELQGMNIDSETKANNGEKNARQR
LLDSSC
Sequence length 426
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Efferocytosis
NOD-like receptor signaling pathway
  Electric Transmission Across Gap Junctions
The NLRP3 inflammasome
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
16
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Oocyte maturation defect 7 Pathogenic rs1591529258, rs1212949833, rs1591529130, rs1591499598 RCV000850135
RCV000850136
RCV000850137
RCV000850138
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOIMMUNE THYROID DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
FEMALE INFERTILITY DUE TO OOCYTE MEIOTIC ARREST Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alveolar rhabdomyosarcoma Alveolar Rhabdomyosarcoma BEFREE 30459312
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 28612258
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder BEFREE 29221793
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety Disorder BEFREE 29221793
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Aortic aneurysm Pubtator 35315432 Stimulate
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Abdominal Aortic aneurysm Pubtator 35315432 Associate
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 29057961
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis BEFREE 30101191
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 29057961
★☆☆☆☆
Found in Text Mining only
Behcet Syndrome Behcet Syndrome BEFREE 31211503
★☆☆☆☆
Found in Text Mining only