Gene Gene information from NCBI Gene database.
Entrez ID 23746
Gene name AIP like 1 HSP90 co-chaperone
Gene symbol AIPL1
Synonyms (NCBI Gene)
AIPL2LCA4
Chromosome 17
Chromosome location 17p13.2
Summary Leber congenital amaurosis (LCA) is the most severe inherited retinopathy with the earliest age of onset and accounts for at least 5% of all inherited retinal diseases. Affected individuals are diagnosed at birth or in the first few months of life with ny
SNPs SNP information provided by dbSNP.
24
SNP ID Visualize variation Clinical significance Consequence
rs16955851 T>A Conflicting-interpretations-of-pathogenicity, benign-likely-benign, likely-benign Intron variant, missense variant, coding sequence variant
rs61757484 G>A,C Benign-likely-benign, likely-benign, pathogenic, benign Missense variant, coding sequence variant, 3 prime UTR variant
rs62637010 C>G Pathogenic, not-provided Missense variant, coding sequence variant
rs62637011 A>T Pathogenic, not-provided Missense variant, coding sequence variant
rs62637012 A>G Pathogenic, not-provided Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
187
miRTarBase ID miRNA Experiments Reference
MIRT052853 hsa-miR-3615 CLASH 23622248
MIRT662528 hsa-miR-4705 HITS-CLIP 23824327
MIRT662527 hsa-miR-1915-3p HITS-CLIP 23824327
MIRT662526 hsa-miR-6764-5p HITS-CLIP 23824327
MIRT662525 hsa-miR-4726-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
22
GO ID Ontology Definition Evidence Reference
GO:0001895 Process Retina homeostasis IEA
GO:0001917 Component Photoreceptor inner segment IEA
GO:0001918 Function Farnesylated protein binding IDA 14555765
GO:0003755 Function Peptidyl-prolyl cis-trans isomerase activity IEA
GO:0005515 Function Protein binding IPI 12374762, 21044950, 32296183
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604392 359 ENSG00000129221
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9NZN9
Protein name Aryl-hydrocarbon-interacting protein-like 1
Protein function May be important in protein trafficking and/or protein folding and stabilization.
PDB 5U9A , 5U9I , 5U9J , 5U9K , 5V35 , 6PX0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00254 FKBP_C 26 154 FKBP-type peptidyl-prolyl cis-trans isomerase Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in retina. Specifically localized to the developing photoreceptor layer and within the photoreceptors of the adult retina. {ECO:0000269|PubMed:12374762}.
Sequence
MDAALLLNVEGVKKTILHGGTGELPNFITGSRVIFHFRTMKCDEERTVIDDSRQVGQPMH
IIIGNMFKLEVWEILLTSMRVHEVAEFWCDTIHTGVYPILSRSLRQMAQGKDPTEWHVHT
CGLANMFAYHTLGYEDLDELQKEPQPLVFVIELL
QVDAPSDYQRETWNLSNHEKMKAVPV
LHGEGNRLFKLGRYEEASSKYQEAIICLRNLQTKEKPWEVQWLKLEKMINTLILNYCQCL
LKKEEYYEVLEHTSDILRHHPGIVKAYYVRARAHAEVWNEAEAKADLQKVLELEPSMQKA
VRRELRLLENRMAEKQEEERLRCRNMLSQGATQPPAEPPTEPPAQSSTEPPAEPPTAPSA
ELSAGPPAEPATEPPPSPGHSLQH
Sequence length 384
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Cushing syndrome
Chemical carcinogenesis - receptor activation
 
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
28
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the eye Likely pathogenic rs2150675170 RCV001814356
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
AIPL1-related disorder Pathogenic rs62637014, rs142326926, rs751881283 RCV000365317
RCV005625259
RCV004733170
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
AIPL1-related retinopathy Pathogenic; Likely pathogenic rs140808549, rs62637009, rs765411357, rs150097891, rs201883601, rs62637014, rs62637016, rs62637012, rs2543878362, rs1336690304, rs1264794214, rs62637010, rs142326926, rs775364986, rs752193525
View all (3 more)
RCV005646860
RCV005646863
RCV005647395
RCV005647396
RCV005647404
View all (13 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cone-rod dystrophy 2 Likely pathogenic; Pathogenic rs1597331616 RCV000790980
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormality of neuronal migration Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BLINDNESS AND LOW VISION Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Amaurosis congenita of Leber type 1 Leber congenital amaurosis Pubtator 21900377 Associate
★☆☆☆☆
Found in Text Mining only
Amaurosis congenita of Leber, type 1 Leber congenital amaurosis BEFREE 10873396, 11420621, 11929855, 12374762, 12881340, 14555765, 14611946, 15081406, 15249368, 15347646, 15469903, 16052170, 16505055, 16936081, 18408180
View all (18 more)
★☆☆☆☆
Found in Text Mining only
Anophthalmos Anophthalmia Pubtator 40141357 Associate
★☆☆☆☆
Found in Text Mining only
Anterior segment mesenchymal dysgenesis Anterior segment mesenchymal dysgenesis Pubtator 32976546 Associate
★☆☆☆☆
Found in Text Mining only
Ataxia, Spinocerebellar Spinocerebellar Ataxia BEFREE 16020312
★☆☆☆☆
Found in Text Mining only
Atrophoderma maculatum Anetoderma HPO_DG
★☆☆☆☆
Found in Text Mining only
Blindness Blindness Pubtator 14611946, 28739921 Associate
★☆☆☆☆
Found in Text Mining only
Cataract Cataract BEFREE 15249368
★☆☆☆☆
Found in Text Mining only
Cataract Cataract Pubtator 40141357 Associate
★☆☆☆☆
Found in Text Mining only
Cataract Cataract HPO_DG
★☆☆☆☆
Found in Text Mining only