Gene Gene information from NCBI Gene database.
Entrez ID 23327
Gene name NEDD4 like E3 ubiquitin protein ligase
Gene symbol NEDD4L
Synonyms (NCBI Gene)
NEDD4-2NEDD4.2PVNH7RSP5hNEDD4-2
Chromosome 18
Chromosome location 18q21.31
Summary This gene encodes a member of the Nedd4 family of HECT domain E3 ubiquitin ligases. HECT domain E3 ubiquitin ligases transfer ubiquitin from E2 ubiquitin-conjugating enzymes to protein substrates, thus targeting specific proteins for lysosomal degradation
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs4149601 G>A Drug-response Coding sequence variant, synonymous variant, genic upstream transcript variant, 5 prime UTR variant, intron variant
miRNA miRNA information provided by mirtarbase database.
585
miRTarBase ID miRNA Experiments Reference
MIRT030590 hsa-miR-24-3p Microarray 19748357
MIRT038151 hsa-miR-423-5p CLASH 23622248
MIRT036071 hsa-miR-1296-5p CLASH 23622248
MIRT545531 hsa-miR-5011-5p PAR-CLIP 21572407
MIRT545530 hsa-miR-656-3p PAR-CLIP 21572407
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
SUPT3H Activation 8649367
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
58
GO ID Ontology Definition Evidence Reference
GO:0003254 Process Regulation of membrane depolarization IDA 15217910
GO:0004842 Function Ubiquitin-protein transferase activity IEA
GO:0004842 Function Ubiquitin-protein transferase activity NAS 11244092
GO:0004842 Function Ubiquitin-protein transferase activity TAS
GO:0005515 Function Protein binding IPI 11244092, 15677482, 18577513, 19664597, 19706893, 20086093, 20936779, 22024150, 22921829, 23236378, 23529131, 23686771, 23873930, 25416956, 26854353, 27445338, 28514442, 31980649, 32296183, 33961781, 34927784, 35271311, 36931259, 38270169
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606384 7728 ENSG00000049759
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96PU5
Protein name E3 ubiquitin-protein ligase NEDD4-like (EC 2.3.2.26) (EC 2.3.2.36) (HECT-type E3 ubiquitin transferase NED4L) (NEDD4.2) (Nedd4-2)
Protein function E3 ubiquitin-protein ligase that mediates the polyubiquitination of lysine and cysteine residues on target proteins and is thereby implicated in the regulation of various signaling pathways including autophagy, innate immunity or DNA repair (Pub
PDB 2LAJ , 2LB2 , 2LTY , 2MPT , 2NSQ , 2ONI , 3JVZ , 3JW0 , 5HPK , 6ZBT , 6ZC9 , 7LP1 , 7LP2 , 7LP3 , 7LP4 , 7LP5 , 7NMZ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00168 C2 20 127 C2 domain Domain
PF00397 WW 195 224 WW domain Domain
PF00397 WW 387 416 WW domain Domain
PF00397 WW 499 528 WW domain Domain
PF00397 WW 550 579 WW domain Domain
PF00632 HECT 669 974 HECT-domain (ubiquitin-transferase) Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed, with highest levels in prostate, pancreas, and kidney (PubMed:14615060, PubMed:15496141, PubMed:19664597). Expressed in melanocytes (PubMed:23999003). {ECO:0000269|PubMed:14615060, ECO:0000269|PubMed:15496141, E
Sequence
MATGLGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELAL
VQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDP
TMERPYT
FKDFLLRPRSHKSRVKGFLRLKMAYMPKNGGQDEENSDQRDDMEHGWEVVDSN
DSASQHQEELPPPPLPPGWEEKVDNLGRTYYVNHNNRTTQWHRPSLMDVSSESDNNIRQI
NQEAAHRRFRSRRHISEDLEPEPSEGGDVPEPWETISEEVNIAGDSLGLALPPPPASPGS
RTSPQELSEELSRRLQITPDSNGEQFSSLIQREPSSRLRSCSVTDAVAEQGHLPPPSAPA
GRARSSTVTGGEEPTPSVAYVHTTPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIMQL
AEDGASGSATNSNNHLIEPQIRRPRSLSSPTVTLSAPLEGAKDSPVRRAVKDTLSNPQSP
QPSPYNSPKPQHKVTQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRLKFPVHMRSKT
SLNPNDLGPLPPGWEERIHLDGRTFYIDHNSKITQWEDPRLQNPAITGPAVPYSREFKQK
YDYFRKKLKKPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDY
GGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLA
VFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTELDLMFCIDEE
NFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLI
KIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQ
FVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREK
LLMAVENAQGFEGV
D
Sequence length 975
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Ubiquitin mediated proteolysis
Endocytosis
Tight junction
Aldosterone-regulated sodium reabsorption
  Budding and maturation of HIV virion
Downregulation of SMAD2/3:SMAD4 transcriptional activity
Stimuli-sensing channels
Antigen processing: Ubiquitination & Proteasome degradation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
35
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Chromosome 5Q14.3 deletion syndrome, distal Likely pathogenic; Pathogenic rs879255597 RCV003493512
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Intellectual disability Likely pathogenic; Pathogenic rs2059194330 RCV001257766
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Periventricular nodular heterotopia 7 Likely pathogenic; Pathogenic rs2059723813, rs879255599, rs879255598, rs879255597, rs2516772394, rs2046707868, rs2059194330 RCV002245299
RCV000258910
RCV000258902
RCV000258896
RCV003990250
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Periventricular nodular heterotopia with syndactyly, cleft palate and developmental delay Pathogenic; Likely pathogenic rs879255599, rs879255598, rs879255597 RCV000239744
RCV000239730
RCV000239759
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
APPENDICITIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
2-3 toe syndactyly Syndactyly Of The Toes HPO_DG
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 22361880 Associate
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Aortic Aneurysm HPO_DG
★☆☆☆☆
Found in Text Mining only
Aortic Valve Insufficiency Aortic Valve Insufficiency HPO_DG
★☆☆☆☆
Found in Text Mining only
Appendicitis Appendicitis Pubtator 34319380 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Arrhythmias Cardiac Cardiac arrhythmias Pubtator 33414395 Associate
★☆☆☆☆
Found in Text Mining only
Asthma Asthma GWASDB_DG 11022011
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Asthma Asthma BEFREE 25116239
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Asthma Asthma Pubtator 25116239 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Attention Deficit Disorder with Hyperactivity Attention deficit hyperactivity disorder Pubtator 19156173 Associate
★☆☆☆☆
Found in Text Mining only