Gene Gene information from NCBI Gene database.
Entrez ID 2332
Gene name Fragile X messenger ribonucleoprotein 1
Gene symbol FMR1
Synonyms (NCBI Gene)
FMRPFRAXAPOFPOF1
Chromosome X
Chromosome location Xq27.3
Summary The protein encoded by this gene binds RNA and is associated with polysomes. The encoded protein may be involved in mRNA trafficking from the nucleus to the cytoplasm. A trinucleotide repeat (CGG) in the 5` UTR is normally found at 6-53 copies, but an exp
SNPs SNP information provided by dbSNP.
9
SNP ID Visualize variation Clinical significance Consequence
rs121434622 T>A Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs886041088 A>C,G,T Pathogenic Intron variant
rs886041089 G>A Pathogenic Splice donor variant
rs1057518038 A>G Likely-pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs1057518850 A>G Likely-pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
285
miRTarBase ID miRNA Experiments Reference
MIRT007375 hsa-miR-101-3p Luciferase reporter assay 23390134
MIRT007376 hsa-miR-129-5p Luciferase reporter assay 23390134
MIRT007377 hsa-miR-221-3p Luciferase reporter assay 23390134
MIRT030988 hsa-miR-21-5p Microarray 18591254
MIRT109112 hsa-miR-130b-3p Luciferase reporter assayqRT-PCRWestern blot 24021279
Transcription factors Transcription factors information provided by TRRUST V2 database.
9
Transcription factor Regulation Reference
MYC Unknown 9328468
NRF1 Activation 11058604;16500891
NRF1 Unknown 15175277;9302255;9328468
SP1 Activation 16500891
SP1 Unknown 10612627;15175277;9328468
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
170
GO ID Ontology Definition Evidence Reference
GO:0000290 Process Deadenylation-dependent decapping of nuclear-transcribed mRNA IDA 31439799
GO:0000381 Process Regulation of alternative mRNA splicing, via spliceosome IDA 18653529
GO:0000381 Process Regulation of alternative mRNA splicing, via spliceosome IEA
GO:0000775 Component Chromosome, centromeric region IEA
GO:0002092 Process Positive regulation of receptor internalization IDA 25561520
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
309550 3775 ENSG00000102081
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q06787
Protein name Fragile X messenger ribonucleoprotein 1 (Fragile X messenger ribonucleoprotein) (FMRP) (Protein FMR-1)
Protein function Multifunctional polyribosome-associated RNA-binding protein that plays a central role in neuronal development and synaptic plasticity through the regulation of alternative mRNA splicing, mRNA stability, mRNA dendritic transport and postsynaptic
PDB 2BKD , 2FMR , 2LA5 , 2QND , 4OVA , 4QVZ , 4QW2 , 5DE5 , 5DE8 , 5DEA , 5UWJ , 5UWO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18336 Tudor_FRX1 4 52 Fragile X mental retardation Tudor domain Domain
PF05641 Agenet 62 117 Agenet domain Domain
PF17904 KH_9 123 207 FMRP KH0 domain Domain
PF00013 KH_1 220 280 KH domain Domain
PF00013 KH_1 283 333 KH domain Domain
PF12235 FXMRP1_C_core 420 547 Fragile X-related 1 protein core C terminal Family
PF16098 FXMR_C2 549 632 Fragile X-related mental retardation protein C-terminal region 2 Family
Tissue specificity TISSUE SPECIFICITY: Expressed in the brain, cerebellum and testis (PubMed:8401578, PubMed:9259278). Also expressed in epithelial tissues (PubMed:8401578). Expressed in mature oligodendrocytes (OLGs) (PubMed:23891804). Expressed in fibroblast (PubMed:24204
Sequence
Sequence length 632
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
34
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autistic behavior Likely pathogenic rs1057518850 RCV000415417
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Fragile X syndrome Likely pathogenic; Pathogenic rs2043856428, rs2521451788, rs193922936, rs121434622, rs1569545562, rs1557176576, rs2521479850, rs1569545382 RCV001328911
RCV002287600
RCV000162201
RCV000010648
RCV000010649
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Fragile X-associated tremor/ataxia syndrome Likely pathogenic rs2521504046 RCV003228810
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Intellectual disability Likely pathogenic; Pathogenic rs782367211, rs2521361687, rs886041088, rs886041089, rs1057518850 RCV002463572
RCV003228811
RCV000258895
RCV000258904
RCV000415417
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANTI-NEUTROPHIL ANTIBODY ASSOCIATED VASCULITIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANXIETY DISORDERS CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISTIC DISORDER CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 26539667
★☆☆☆☆
Found in Text Mining only
AICARDI-GOUTIERES SYNDROME Aicardi Goutieres Syndrome BEFREE 17007840
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 25111034, 32161452, 37769462 Associate
★☆☆☆☆
Found in Text Mining only
Amenorrhea Amenorrhea Pubtator 21944929 Associate
★☆☆☆☆
Found in Text Mining only
Amnesia Amnesia BEFREE 27372099
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 22072660, 22507827, 25979174, 28424484
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 28424484 Associate
★☆☆☆☆
Found in Text Mining only
Amyotrophic lateral sclerosis 1 Amyotrophic lateral sclerosis Pubtator 33871026 Associate
★☆☆☆☆
Found in Text Mining only
Aneuploidy Aneuploidy Pubtator 25307758, 30509972 Associate
★☆☆☆☆
Found in Text Mining only
Angelman Syndrome Angelman Syndrome BEFREE 28499489
★☆☆☆☆
Found in Text Mining only