Gene Gene information from NCBI Gene database.
Entrez ID 2303
Gene name Forkhead box C2
Gene symbol FOXC2
Synonyms (NCBI Gene)
FKHL14LDMFH-1MFH1
Chromosome 16
Chromosome location 16q24.1
Summary This gene belongs to the forkhead family of transcription factors which is characterized by a distinct DNA-binding forkhead domain. The specific function of this gene has not yet been determined; however, it may play a role in the development of mesenchy
miRNA miRNA information provided by mirtarbase database.
1
miRTarBase ID miRNA Experiments Reference
MIRT736033 hsa-miR-548c-5p Luciferase reporter assayImmunoprecipitaion (IP) 31531679
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
BRCA1 Repression 22120723
GATA3 Repression 22120723
GLI2 Unknown 19360354
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
86
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IEA
GO:0000976 Function Transcription cis-regulatory region binding ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602402 3801 ENSG00000176692
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q99958
Protein name Forkhead box protein C2 (Forkhead-related protein FKHL14) (Mesenchyme fork head protein 1) (MFH-1 protein) (Transcription factor FKH-14)
Protein function Transcriptional activator.
PDB 1D5V , 6AKO , 6AKP , 6LBM , 6O3T
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00250 Forkhead 71 157 Forkhead domain Domain
Sequence
MQARYSVSDPNALGVVPYLSEQNYYRAAGSYGGMASPMGVYSGHPEQYSAGMGRSYAPYH
HHQPAAPKDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSI
RHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFE
NGSFLRRRRRFKKKDVSKEKEER
AHLKEPPPAASKGAPATPHLADAPKEAEKKVVIKSEAASPALPVITKVETLSPESALQGS
PRSAASTPAGSPDGSLPEHHAAAPNGLPGFSVENIMTLRTSPPGGELSPGAGRAGLVVPP
LALPYAAAPPAAYGQPCAQGLEAGAAGGYQCSMRAMSLYTGAERPAHMCVPPALDEALSD
HPSGPTSPLSALNLAAGQEGALAATGHHHQHHGHHHPQAPPPPPAPQPQPTPQPGAAAAQ
AASWYLNHSGDLNHLPGHTFAAQQQTFPNVREMFNSHRLGIENSTLGESQVSGNASCQLP
YRSTPPLYRHAAPYSYDCTKY
Sequence length 501
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
17
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Distichiasis-lymphedema syndrome Pathogenic; Likely pathogenic rs1974229664, rs2144018707, rs2144019324, rs2144020781, rs104894516, rs1567571702, rs1567571141, rs1597403198, rs1567571075, rs1567571065, rs1567571345, rs1567571276, rs1567571564, rs1567571360, rs121909106
View all (11 more)
RCV001334377
RCV001783306
RCV006269530
RCV002250893
RCV000007671
View all (21 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
FOXC2-related disorder Likely pathogenic; Pathogenic rs2507945813, rs2507945700, rs2507945808, rs2507945223 RCV003406070
RCV003416962
RCV003896623
RCV003982659
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
LYMPHEDEMA-DISTICHIASIS SYNDROME WITH RENAL DISEASE AND DIABETES MELLITUS Pathogenic rs1567571636 RCV000007680
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Non-immune hydrops fetalis Likely pathogenic; Pathogenic rs1223233551, rs1567571564 RCV001376048
RCV005357091
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
BLEPHAROPTOSIS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOVASCULAR ABNORMALITIES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL MUSCULOSKELETAL ANOMALIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CRANIOFACIAL ABNORMALITIES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Accessory kidney Accessory Kidney HPO_DG
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 26758745
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Endometrioid Endometrial Cancer BEFREE 26125751
★☆☆☆☆
Found in Text Mining only
Alveolar capillary dysplasia Alveolar capillary dysplasia BEFREE 20425831
★☆☆☆☆
Found in Text Mining only
Anaplasia Anaplasia BEFREE 19935708
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 26733175
★☆☆☆☆
Found in Text Mining only
Arachnoid Cysts Arachnoid cysts Pubtator 20535019, 26545093 Associate
★☆☆☆☆
Found in Text Mining only
Arachnoid Cysts Arachnoid cyst BEFREE 24278289, 30673833
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis Pubtator 32271448 Associate
★☆☆☆☆
Found in Text Mining only
Axenfeld anomaly (disorder) Axenfeld anomaly BEFREE 10767326
★☆☆☆☆
Found in Text Mining only