Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	22996
Gene name	Tetratricopeptide repeat domain 39A
Gene symbol	TTC39A
Synonyms (NCBI Gene)	C1orf34DEME-6
Chromosome	1
Chromosome location	1p32.3

127

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miRTarBase ID	miRNA	Experiments	Reference
MIRT042435	hsa-miR-424-5p	CLASH	23622248
MIRT665612	hsa-miR-508-5p	HITS-CLIP	23824327
MIRT665611	hsa-miR-1273g-3p	HITS-CLIP	23824327
MIRT665609	hsa-miR-6849-3p	HITS-CLIP	23824327
MIRT665610	hsa-miR-1292-3p	HITS-CLIP	23824327
MIRT665608	hsa-miR-766-3p	HITS-CLIP	23824327
MIRT665606	hsa-miR-4793-3p	HITS-CLIP	23824327
MIRT665607	hsa-miR-4299	HITS-CLIP	23824327
MIRT665605	hsa-miR-4252	HITS-CLIP	23824327
MIRT665604	hsa-miR-6512-3p	HITS-CLIP	23824327
MIRT665603	hsa-miR-6720-5p	HITS-CLIP	23824327
MIRT665602	hsa-miR-7703	HITS-CLIP	23824327
MIRT665612	hsa-miR-508-5p	HITS-CLIP	23824327
MIRT665611	hsa-miR-1273g-3p	HITS-CLIP	23824327
MIRT665609	hsa-miR-6849-3p	HITS-CLIP	23824327
MIRT665610	hsa-miR-1292-3p	HITS-CLIP	23824327
MIRT665608	hsa-miR-766-3p	HITS-CLIP	23824327
MIRT665606	hsa-miR-4793-3p	HITS-CLIP	23824327
MIRT665607	hsa-miR-4299	HITS-CLIP	23824327
MIRT665605	hsa-miR-4252	HITS-CLIP	23824327
MIRT665604	hsa-miR-6512-3p	HITS-CLIP	23824327
MIRT665603	hsa-miR-6720-5p	HITS-CLIP	23824327
MIRT665602	hsa-miR-7703	HITS-CLIP	23824327
MIRT1461552	hsa-miR-1273g	CLIP-seq
MIRT1461553	hsa-miR-5095	CLIP-seq
MIRT1461554	hsa-miR-548u	CLIP-seq
MIRT1461555	hsa-miR-552	CLIP-seq
MIRT1461556	hsa-miR-563	CLIP-seq
MIRT1461557	hsa-miR-600	CLIP-seq
MIRT1461558	hsa-miR-876-3p	CLIP-seq
MIRT1461559	hsa-miR-100	CLIP-seq
MIRT1461560	hsa-miR-1206	CLIP-seq
MIRT1461561	hsa-miR-128	CLIP-seq
MIRT1461562	hsa-miR-181a	CLIP-seq
MIRT1461563	hsa-miR-181b	CLIP-seq
MIRT1461564	hsa-miR-181c	CLIP-seq
MIRT1461565	hsa-miR-181d	CLIP-seq
MIRT1461566	hsa-miR-27a	CLIP-seq
MIRT1461567	hsa-miR-27b	CLIP-seq
MIRT1461568	hsa-miR-3689a-5p	CLIP-seq
MIRT1461569	hsa-miR-3689b	CLIP-seq
MIRT1461570	hsa-miR-3689e	CLIP-seq
MIRT1461571	hsa-miR-3689f	CLIP-seq
MIRT1461572	hsa-miR-4262	CLIP-seq
MIRT1461573	hsa-miR-4753-3p	CLIP-seq
MIRT1461574	hsa-miR-485-3p	CLIP-seq
MIRT1461575	hsa-miR-499-3p	CLIP-seq
MIRT1461576	hsa-miR-499a-3p	CLIP-seq
MIRT1461577	hsa-miR-548g	CLIP-seq
MIRT1461578	hsa-miR-99a	CLIP-seq
MIRT1461579	hsa-miR-99b	CLIP-seq
MIRT2138688	hsa-miR-1202	CLIP-seq
MIRT2138689	hsa-miR-1227	CLIP-seq
MIRT2138690	hsa-miR-1236	CLIP-seq
MIRT2138691	hsa-miR-1252	CLIP-seq
MIRT2138692	hsa-miR-1271	CLIP-seq
MIRT2138693	hsa-miR-140-5p	CLIP-seq
MIRT2138694	hsa-miR-182	CLIP-seq
MIRT2138695	hsa-miR-203	CLIP-seq
MIRT2138696	hsa-miR-3120-3p	CLIP-seq
MIRT2138697	hsa-miR-3130-3p	CLIP-seq
MIRT2138698	hsa-miR-3157-3p	CLIP-seq
MIRT2138699	hsa-miR-3177-3p	CLIP-seq
MIRT2138700	hsa-miR-3194-5p	CLIP-seq
MIRT2138701	hsa-miR-3909	CLIP-seq
MIRT2138702	hsa-miR-3938	CLIP-seq
MIRT2138703	hsa-miR-3972	CLIP-seq
MIRT2138704	hsa-miR-4267	CLIP-seq
MIRT2138705	hsa-miR-4307	CLIP-seq
MIRT2138706	hsa-miR-4328	CLIP-seq
MIRT2138707	hsa-miR-4436b-3p	CLIP-seq
MIRT2138708	hsa-miR-4494	CLIP-seq
MIRT2138709	hsa-miR-4638-5p	CLIP-seq
MIRT2138710	hsa-miR-4642	CLIP-seq
MIRT2138711	hsa-miR-4672	CLIP-seq
MIRT2138712	hsa-miR-4680-3p	CLIP-seq
MIRT2138713	hsa-miR-4704-5p	CLIP-seq
MIRT2138714	hsa-miR-4781-3p	CLIP-seq
MIRT2138715	hsa-miR-544	CLIP-seq
MIRT2138716	hsa-miR-545	CLIP-seq
MIRT1461554	hsa-miR-548u	CLIP-seq
MIRT2138717	hsa-miR-874	CLIP-seq
MIRT2138718	hsa-miR-938	CLIP-seq
MIRT2138719	hsa-miR-944	CLIP-seq
MIRT2138720	hsa-miR-96	CLIP-seq
MIRT2138707	hsa-miR-4436b-3p	CLIP-seq
MIRT2359549	hsa-miR-1207-5p	CLIP-seq
MIRT2359550	hsa-miR-1909	CLIP-seq
MIRT2359551	hsa-miR-3714	CLIP-seq
MIRT2138707	hsa-miR-4436b-3p	CLIP-seq
MIRT2359552	hsa-miR-4716-3p	CLIP-seq
MIRT2359553	hsa-miR-4723-5p	CLIP-seq
MIRT2359554	hsa-miR-4728-5p	CLIP-seq
MIRT2359555	hsa-miR-4761-3p	CLIP-seq
MIRT2359556	hsa-miR-4763-3p	CLIP-seq
MIRT2359557	hsa-miR-4800-5p	CLIP-seq
MIRT2359558	hsa-miR-548an	CLIP-seq
MIRT2359559	hsa-miR-711	CLIP-seq
MIRT2359560	hsa-miR-940	CLIP-seq
MIRT2652853	hsa-miR-146a	CLIP-seq
MIRT2652854	hsa-miR-146b-5p	CLIP-seq
MIRT2652855	hsa-miR-198	CLIP-seq
MIRT2652856	hsa-miR-28-5p	CLIP-seq
MIRT2652857	hsa-miR-3139	CLIP-seq
MIRT2652858	hsa-miR-4251	CLIP-seq
MIRT2138704	hsa-miR-4267	CLIP-seq
MIRT2652859	hsa-miR-4433	CLIP-seq
MIRT2652860	hsa-miR-4459	CLIP-seq
MIRT2138712	hsa-miR-4680-3p	CLIP-seq
MIRT2652861	hsa-miR-4768-3p	CLIP-seq
MIRT2652862	hsa-miR-589	CLIP-seq
MIRT2652863	hsa-miR-628-5p	CLIP-seq
MIRT2652864	hsa-miR-708	CLIP-seq
MIRT2652853	hsa-miR-146a	CLIP-seq
MIRT2652854	hsa-miR-146b-5p	CLIP-seq
MIRT2652855	hsa-miR-198	CLIP-seq
MIRT2652856	hsa-miR-28-5p	CLIP-seq
MIRT2652857	hsa-miR-3139	CLIP-seq
MIRT2652858	hsa-miR-4251	CLIP-seq
MIRT2138704	hsa-miR-4267	CLIP-seq
MIRT2652859	hsa-miR-4433	CLIP-seq
MIRT2652860	hsa-miR-4459	CLIP-seq
MIRT2138712	hsa-miR-4680-3p	CLIP-seq
MIRT2652861	hsa-miR-4768-3p	CLIP-seq
MIRT2652862	hsa-miR-589	CLIP-seq
MIRT2652863	hsa-miR-628-5p	CLIP-seq
MIRT2652864	hsa-miR-708	CLIP-seq

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GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	32296183
GO:0005813	Component	Centrosome	IDA

MIM	HGNC	e!Ensembl
619885	18657	ENSG00000085831

Q5SRH9

Protein name

Tetratricopeptide repeat protein 39A (TPR repeat protein 39A) (Differentially expressed in MCF-7 with estradiol protein 6) (DEME-6)

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF10300	DUF3808	29 → 148	Protein of unknown function (DUF3808)	Family
PF10300	DUF3808	171 → 518	Protein of unknown function (DUF3808)	Family

Sequence

MGQKGHKDSLYPCGGTPESSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLT
YATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFTEE
EIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRALHDPSHACSCPPGPGRQHLFLLQDEN
MVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGENHPHFEGGVKLGVGAFNLTLSMLPTR
ILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLLCYHTFLTFVLGTGNVNIEEA
EKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAAIRRFEECCEAQQHWKQFHHMCYWELM
WCFTYKGQWKMSYFYADLLSKENCWSKATYIYMKAAYLSMFGKEDHKPFGDDEVELFRAV
PGLKLKIAGKSLPTEKFAIRKSRRYFSSNPISLPVPALEMMYIWNGYAVIGKQPKLTDGI
LEIITKAEEMLEKGPENEYSVDDECLVKLLKGLCLKYLGRVQEAEENFRSISANEKKIKY
DHYLIPNALLELALLLMEQDRNEEAIKLLESAKQNYKNYSMESRTHFRIQAATLQAKSSL
ENSSRSMVSSVSL

Sequence length

613

Interactions

View interactions

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (5)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
HEART FAILURE	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
LIVER NEOPLASMS	—	CTD	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Malignant tumor of urinary bladder	Uncertain significance	ClinVar	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Wolff-Parkinson-White pattern	Uncertain significance	ClinVar	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
WOLFF-PARKINSON-WHITE SYNDROME	—	Disgenet	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Show/Hide Text Mining Associations (4)

Disease Name	Disease (Merged)	Source	PMID	Relationship Type	Evidence Score
Associations from Text Mining Disease associations identified through text mining
Breast Carcinoma	Breast Carcinoma	BEFREE	9461476		★★★★★ ★☆☆☆☆ Found in Text Mining only
Breast Neoplasms	Breast neoplasm	Pubtator	9461476	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Liver neoplasms	Liver neoplasms	CTD_human_DG	17114358		★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Malignant neoplasm of liver	Liver Cancer	CTD_human_DG	17114358		★★★★★ ★☆☆☆☆ Found in Text Mining only

TTC39A (tetratricopeptide repeat domain 39A)