Gene Gene information from NCBI Gene database.
Entrez ID 22995
Gene name Centrosomal protein 152
Gene symbol CEP152
Synonyms (NCBI Gene)
MCPH4MCPH9SCKL5
Chromosome 15
Chromosome location 15q21.1
Summary This gene encodes a protein that is thought to be involved with centrosome function. Mutations in this gene have been associated with primary microcephaly (MCPH4). Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2010
SNPs SNP information provided by dbSNP.
31
SNP ID Visualize variation Clinical significance Consequence
rs74553953 G>C Uncertain-significance, benign-likely-benign, conflicting-interpretations-of-pathogenicity Non coding transcript variant, missense variant, genic downstream transcript variant, coding sequence variant
rs141600901 CA>- Likely-benign, benign-likely-benign, pathogenic 3 prime UTR variant, coding sequence variant, frameshift variant, genic downstream transcript variant, intron variant
rs182018947 A>C,G Pathogenic, pathogenic-likely-pathogenic, uncertain-significance, conflicting-interpretations-of-pathogenicity Stop gained, synonymous variant, non coding transcript variant, coding sequence variant
rs188101277 C>T Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity Genic upstream transcript variant, non coding transcript variant, coding sequence variant, missense variant
rs200879436 T>C Likely-benign, pathogenic, benign Coding sequence variant, missense variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
24
miRTarBase ID miRNA Experiments Reference
MIRT031041 hsa-miR-21-5p Microarray 18591254
MIRT048076 hsa-miR-197-3p CLASH 23622248
MIRT047867 hsa-miR-30c-5p CLASH 23622248
MIRT046124 hsa-miR-30b-5p CLASH 23622248
MIRT040946 hsa-miR-18a-3p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
26
GO ID Ontology Definition Evidence Reference
GO:0000242 Component Pericentriolar material IDA 26337392
GO:0005515 Function Protein binding IPI 20852615, 21059844, 21131973, 24997597, 26188084, 26297806, 26496610, 26638075, 35709258, 35849559
GO:0005654 Component Nucleoplasm IDA
GO:0005737 Component Cytoplasm IEA
GO:0005813 Component Centrosome IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613529 29298 ENSG00000103995
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O94986
Protein name Centrosomal protein of 152 kDa (Cep152)
Protein function Necessary for centrosome duplication; the function also seems to involve CEP63, CDK5RAP2 and WDR62 through a stepwise assembled complex at the centrosome that recruits CDK2 required for centriole duplication (PubMed:26297806). Acts as a molecula
PDB 4N7V , 6CSU , 6CSV
Family and domains
Sequence
MSLDFGSVALPVQNEDEEYDEEDYEREKELQQLLTDLPHDMLDDDLSSPELQYSDCSEDG
TDGQPHHPEQLEMSWNEQMLPKSQSVNGYNEIQSLYAGEKCGNVWEENRSKTEDRHPVYH
PEEGGDEGGSGYSPPSKCEQTDLYHLPENFRPYTNGQKQEFNNQATNVIKFSDPQWNHFQ
GPSCQGLEPYNKVTYKPYQSSAQNNGSPAQEITGSDTFEGLQQQFLGANENSAENMQIIQ
LQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKER
EIQLEAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHE
SIVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEII
NKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELKDE
ISLYESAAKLGIHPSDSEGELNIELTESYVDLGIKKVNWKKSKVTSIVQEEDPNEELSKD
EFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKKDEKSIEVETKTDTS
EKPKNQLWPESSTSDVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLCNQMRQMV
QDFDHDKQEAVDRCERTYQQHHEAMKTQIRESLLAKHALEKQQLFEAYERTHLQLRSELD
KLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQT
IKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLE
IELELKHCENITKQVEIAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVSVNKRIS
FAVSEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKNEEVPVVIRAELAKARSEW
NKEKQEEIHRIQEQNEQDYRQFLDDHRNKINEVLAAAKEDFMKQKTELLLQKETELQTCL
DQSRREWTMQEAKRIQLEIYQYEEDILTVLGVLLSDTQKEHISDSEDKQLLEIMSTCSSK
WMSVQYFEKLKGCIQKAFQDTLPLLVENADPEWKKRNMAELSKDSASQGTGQGDPGPAAG
HHAQPLALQATEAEADKKKVLEIKDLCCGHCFQELEKAKQECQDLKGKLEKCCRHLQHLE
RKHKAVVEKIGEENNKVVEELIEENNDMKNKLEELQTLCKTPPRSLSAGAIENACLPCSG
GALEELRGQYIKAVKKIKCDMLRYIQESKERAAEMVKAEVLRERQETARKMRKYYLICLQ
QILQDDGKEGAEKKIMNAASKLATMAKLLETPISSKSQSKTTQSALPLTSEMLIAVKKSK
RNDVNQKIPCCIESKSNSVNTITRTLCEQAPKRRAACNLQRLLENSEHQSIKHVGSKETH
LEFQFGDGSCKHLNSLPRNVSPEFVPCEGEGGFGLHKKKDLLSDNGSESLPHSAAYPFLG
TLGNKPSPRCTPGPSESGCMHITFRDSNERLGLKVYKCNPLMESENAASEKSQGLDVQEP
PVKDGGDLSDCLGWPSSSATLSFDSREASFVHGRPQGTLEIPSESVKSKQFSPSGYLSDT
EESNMICQTMKCQRYQTPYLSEETTYLEPGKISVNCGHPSRHKADRLKSDFKKLSSTLPS
SVCQQPSRKLIVPLSSQQDSGFDSPFVNLD
Sequence length 1710
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Regulation of PLK1 Activity at G2/M Transition
Loss of Nlp from mitotic centrosomes
Recruitment of mitotic centrosome proteins and complexes
Loss of proteins required for interphase microtubule organization from the centrosome
Recruitment of NuMA to mitotic centrosomes
Anchoring of the basal body to the plasma membrane
AURKA Activation by TPX2
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
18
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
CEP152-related disorder Likely pathogenic; Pathogenic rs267606717, rs182018947, rs199773611, rs1895345135, rs2504602075, rs1555418825, rs754267846, rs537376932 RCV000778440
RCV004556749
RCV004536487
RCV003324187
RCV004534387
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Microcephaly 9, primary, autosomal recessive Likely pathogenic; Pathogenic rs748767202, rs764602105, rs1208144689, rs766194658, rs1263911484, rs267606717, rs267606718, rs754565020, rs587783423, rs587783421, rs182018947, rs587783414, rs2504488763, rs376895274, rs869312853
View all (16 more)
RCV005003039
RCV005005232
RCV002226781
RCV001839057
RCV003989708
View all (26 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Seckel syndrome Likely pathogenic; Pathogenic rs1342429887 RCV000616115
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Seckel syndrome 5 Likely pathogenic; Pathogenic rs748767202, rs764602105, rs1208144689, rs766194658, rs267606717, rs754565020, rs587783423, rs182018947, rs376895274, rs2504602075, rs1421061751, rs748089878, rs957548078, rs763537210, rs776054057
View all (4 more)
RCV005003039
RCV005005232
RCV005005256
RCV001839057
RCV000763360
View all (14 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTOSOMAL RECESSIVE PRIMARY MICROCEPHALY Disgenet, GenCC, Orphanet
Disgenet, GenCC, Orphanet
Disgenet, GenCC, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colon adenocarcinoma Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
COLOR VISION DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Agenesis of corpus callosum Agenesis Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only
Atrioventricular Septal Defect Atrioventricular septal defect Pubtator 25996639 Associate
★☆☆☆☆
Found in Text Mining only
Autosomal Recessive Primary Microcephaly Microcephaly BEFREE 21983783, 24148351
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autosomal Recessive Primary Microcephaly Primary microcephaly Pubtator 26297806 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autosomal Recessive Primary Microcephaly Microcephaly ORPHANET_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autosomal recessive primary microcephaly Microcephaly Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only
Clinodactyly of the 5th finger Camptodactyly of fingers HPO_DG
★☆☆☆☆
Found in Text Mining only
Craniosynostosis Craniosynostosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Diabetic Nephropathies Diabetic neuropathy Pubtator 37916327 Stimulate
★☆☆☆☆
Found in Text Mining only