Gene Gene information from NCBI Gene database.
Entrez ID 22827
Gene name Poly(U) binding splicing factor 60
Gene symbol PUF60
Synonyms (NCBI Gene)
FIRRoBPISIAHBP1VRJS
Chromosome 8
Chromosome location 8q24.3
Summary This gene encodes a nucleic acid-binding protein that plays a role in a variety of nuclear processes, including pre-mRNA splicing and transcriptional regulation. The encoded protein forms a complex with the far upstream DNA element (FUSE) and FUSE-binding
SNPs SNP information provided by dbSNP.
14
SNP ID Visualize variation Clinical significance Consequence
rs398123001 G>A Pathogenic Coding sequence variant, missense variant
rs886041995 C>T Pathogenic Stop gained, coding sequence variant
rs1057518046 ->C Likely-pathogenic Frameshift variant, coding sequence variant
rs1085307135 C>T Likely-pathogenic, pathogenic, uncertain-significance Missense variant, coding sequence variant
rs1085307137 C>T Likely-pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
35
miRTarBase ID miRNA Experiments Reference
MIRT042259 hsa-miR-484 CLASH 23622248
MIRT038851 hsa-miR-93-3p CLASH 23622248
MIRT439856 hsa-miR-218-5p HITS-CLIP 23212916
MIRT439856 hsa-miR-218-5p HITS-CLIP 23212916
MIRT1276851 hsa-miR-103a CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
19
GO ID Ontology Definition Evidence Reference
GO:0000380 Process Alternative mRNA splicing, via spliceosome IBA
GO:0000381 Process Regulation of alternative mRNA splicing, via spliceosome IBA
GO:0000381 Process Regulation of alternative mRNA splicing, via spliceosome IEA
GO:0003676 Function Nucleic acid binding IEA
GO:0003677 Function DNA binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604819 17042 ENSG00000179950
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9UHX1
Protein name Poly(U)-binding-splicing factor PUF60 (60 kDa poly(U)-binding-splicing factor) (FUSE-binding protein-interacting repressor) (FBP-interacting repressor) (Ro-binding protein 1) (RoBP1) (Siah-binding protein 1) (Siah-BP1)
Protein function DNA- and RNA-binding protein, involved in several nuclear processes such as pre-mRNA splicing, apoptosis and transcription regulation. In association with FUBP1 regulates MYC transcription at the P2 promoter through the core-TFIIH basal transcri
PDB 2DNY , 2KXF , 2KXH , 2QFJ , 3DXB , 3UE2 , 3US5 , 3UWT , 5KVY , 5KW1 , 5KW6 , 5KWQ , 6LUR , 6SLO , 7Q8A , 7Z3X
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00076 RRM_1 131 201 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Domain
PF00076 RRM_1 228 298 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Domain
Tissue specificity TISSUE SPECIFICITY: Isoform 2 is expressed in colonic epithelium and colorectal epithelium cancer (at protein level). Isoform 6 is expressed in colorectal epithelial cancer but below detection level in colonic epithelium. Expressed in heart, brain, placen
Sequence
MATATIALQVNGQQGGGSEPAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLT
PEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAVTMGFGDPLSPLQSMAAQ
RQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP
EAAQLALEQMNSVMLGGRNIK
VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD
DIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR
VG
KAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTL
AQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKE
EEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLE
GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR
KVVAEVYDQERFDNSDLSA
Sequence length 559
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Spliceosome   mRNA Splicing - Major Pathway
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
13
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
8q24.3 microdeletion syndrome Pathogenic; Likely pathogenic rs1816565787, rs2130258214, rs2130256693, rs1064795388, rs2130223089, rs2130244708, rs2130242101, rs2130247180, rs2130242336, rs2130205866, rs2130202692, rs1210239952, rs1464053660, rs1229324113, rs1816618311
View all (37 more)
RCV001336869
RCV002246415
RCV001782691
RCV001783649
RCV001807871
View all (48 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
CHARGE syndrome Likely pathogenic; Pathogenic rs1554643584 RCV001034553
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Intellectual disability Pathogenic rs1816565787 RCV005626402
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Intellectual disability-cardiac anomalies-short stature-joint laxity syndrome Pathogenic rs2130231971, rs2538860687, rs758941113, rs2538896067, rs1816618311 RCV003492745
RCV003492754
RCV003493285
RCV003493286
RCV003985841
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
INTELLECTUAL DISABILITY, CARDIAC ANOMALIES, SHORT STATURE, JOINT LAXITY SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
MESOTHELIOMA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
NECROSIS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
8q24.3 microdeletion syndrome 8q24.3 microdeletion syndrome Orphanet
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Adult type dermatomyositis Dermatomyositis BEFREE 29541951, 30980774
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Abdominal Aortic aneurysm Pubtator 27157464 Associate
★☆☆☆☆
Found in Text Mining only
Aortic coarctation Aortic Coarctation HPO_DG
★☆☆☆☆
Found in Text Mining only
Aortic coarctation Aortic Coarctation CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Atrioventricular Septal Defect Atrioventricular septal defect HPO_DG
★☆☆☆☆
Found in Text Mining only
Attention deficit hyperactivity disorder Attention Deficit Hyperactivity Disorder CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Behavioral tic Tourette syndrome HPO_DG
★☆☆☆☆
Found in Text Mining only
Bilateral microphthalmos Microphthalmos HPO_DG
★☆☆☆☆
Found in Text Mining only
Bilateral renal hypoplasia Bilateral renal hypoplasia HPO_DG
★☆☆☆☆
Found in Text Mining only