Gene Gene information from NCBI Gene database.
Entrez ID 2273
Gene name Four and a half LIM domains 1
Gene symbol FHL1
Synonyms (NCBI Gene)
FCMSUFHL-1FHL1AFHL1BFLH1AKYOTRBMX1ARBMX1BSLIMSLIM-1SLIM1SLIMMERXMPMA
Chromosome X
Chromosome location Xq26.3
Summary This gene encodes a member of the four-and-a-half-LIM-only protein family. Family members contain two highly conserved, tandemly arranged, zinc finger domains with four highly conserved cysteines binding a zinc atom in each zinc finger. Expression of thes
SNPs SNP information provided by dbSNP.
34
SNP ID Visualize variation Clinical significance Consequence
rs122458140 G>C Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs122458141 C>G Pathogenic Coding sequence variant, non coding transcript variant, intron variant, missense variant
rs122458142 C>T Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs122458143 G>T Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs122458144 T>C,G Pathogenic, uncertain-significance Coding sequence variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
155
miRTarBase ID miRNA Experiments Reference
MIRT019004 hsa-miR-335-5p Microarray 18185580
MIRT734156 hsa-miR-664a-3p Luciferase reporter assayWestern blottingqRT-PCRELISA 31632001
MIRT735992 hsa-miR-96-5p Luciferase reporter assayqRT-PCR 33322515
MIRT736056 hsa-miR-138-5p Luciferase reporter assayqRT-PCR 33148375
MIRT735992 hsa-miR-96-5p Luciferase reporter assayWestern blottingqRT-PCR 36017148
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
HOXD13 Unknown 18758158
TLX1 Unknown 18073142
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
24
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 18482256, 19401155, 20969868, 21900206, 23414517, 28671123, 35271311
GO:0005634 Component Nucleus IDA 21702045
GO:0005634 Component Nucleus IEA
GO:0005737 Component Cytoplasm IDA 21702045
GO:0005737 Component Cytoplasm IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300163 3702 ENSG00000022267
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q13642
Protein name Four and a half LIM domains protein 1 (FHL-1) (Skeletal muscle LIM-protein 1) (SLIM) (SLIM-1)
Protein function May have an involvement in muscle development or hypertrophy.
PDB 1X63 , 2CUP , 2CUR , 2EGQ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00412 LIM 40 97 LIM domain Domain
PF00412 LIM 101 158 LIM domain Domain
PF00412 LIM 162 216 LIM domain Domain
Tissue specificity TISSUE SPECIFICITY: Isoform 1 is highly expressed in skeletal muscle and to a lesser extent in heart, placenta, ovary, prostate, testis, small intestine, colon and spleen. Expression is barely detectable in brain, lung, liver, kidney, pancreas, thymus and
Sequence
MAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRF
WHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTRED
SPKCKGCFKAIVAGDQNVEYKGT
VWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF
AKHCVKCNKAITSGGITYQDQP
WHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF
VAKKCAGCKNPITGKRTVSRVSHP
VSKARKPPVCHGKRLPLTLFPSANLRGRHPGGERTCPSWVVVLYRKNRSLAAPRGPGLVK
APVWWPMKDNPGTTTASTAKNAP
Sequence length 323
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  JAK-STAT signaling pathway
Cytoskeleton in muscle cells
 
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
29
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the musculature Likely pathogenic; Pathogenic rs122458144 RCV001813974
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Asymmetric septal hypertrophy Likely pathogenic rs2073915687 RCV001251030
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cardiovascular phenotype Pathogenic rs2148373432, rs2521266207, rs2521287361, rs2521264630, rs1569530588 RCV002442948
RCV003288483
RCV003341697
RCV004511012
RCV005338325
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Centronuclear myopathy Pathogenic rs122458143 RCV004585997
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CARDIOMYOPATHY, HYPERTROPHIC, FAMILIAL Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
FHL1-related disorder Likely benign; Benign; Conflicting classifications of pathogenicity; Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
HEART FAILURE, DIASTOLIC CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
HEMOPHAGOCYTIC LYMPHOHISTIOCYTOSIS, FAMILIAL, 1 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations