Gene Gene information from NCBI Gene database.
Entrez ID 2218
Gene name Fukutin
Gene symbol FKTN
Synonyms (NCBI Gene)
CMD1XFCMDLGMD2MLGMDR13MDDGA4MDDGB4MDDGC4
Chromosome 9
Chromosome location 9q31.2
Summary The protein encoded by this gene is a putative transmembrane protein that is localized to the cis-Golgi compartment, where it may be involved in the glycosylation of alpha-dystroglycan in skeletal muscle. The encoded protein is thought to be a glycosyltra
SNPs SNP information provided by dbSNP.
73
SNP ID Visualize variation Clinical significance Consequence
rs119463990 C>T Pathogenic Non coding transcript variant, genic upstream transcript variant, 5 prime UTR variant, stop gained, coding sequence variant, upstream transcript variant
rs119463991 C>T Pathogenic Coding sequence variant, non coding transcript variant, 5 prime UTR variant, stop gained
rs119463992 G>A Pathogenic Coding sequence variant, non coding transcript variant, missense variant, intron variant
rs119463993 A>C Pathogenic Coding sequence variant, non coding transcript variant, missense variant, intron variant
rs119463994 G>A,C Likely-pathogenic, pathogenic Coding sequence variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
591
miRTarBase ID miRNA Experiments Reference
MIRT030086 hsa-miR-26b-5p Microarray 19088304
MIRT048207 hsa-miR-196a-5p CLASH 23622248
MIRT047823 hsa-miR-30d-5p CLASH 23622248
MIRT715208 hsa-miR-519a-3p HITS-CLIP 19536157
MIRT715207 hsa-miR-519b-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
32
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IBA
GO:0000139 Component Golgi membrane IDA 17034757, 26923585
GO:0000139 Component Golgi membrane IEA
GO:0005515 Function Protein binding IPI 17034757, 27601598, 28514442, 29477842, 33961781
GO:0005615 Component Extracellular space TAS 9690476
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607440 3622 ENSG00000106692
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O75072
Protein name Ribitol-5-phosphate transferase FKTN (EC 2.7.8.-) (Fukutin) (Fukuyama-type congenital muscular dystrophy protein) (Ribitol-5-phosphate transferase)
Protein function Catalyzes the transfer of a ribitol-phosphate from CDP-ribitol to the distal N-acetylgalactosamine of the phosphorylated O-mannosyl trisaccharide (N-acetylgalactosamine-beta-3-N-acetylglucosamine-beta-4-(phosphate-6-)mannose), a carbohydrate str
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04991 LicD 289 340 LicD family Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in the retina (at protein level) (PubMed:29416295). Widely expressed with highest expression in brain, heart, pancreas and skeletal muscle (PubMed:11115853). Expressed at similar levels in control fetal and adult brain (PubMe
Sequence
MSRINKNVVLALLTLTSSAFLLFQLYYYKHYLSTKNGAGLSKSKGSRIGFDSTQWRAVKK
FIMLTSNQNVPVFLIDPLILELINKNFEQVKNTSHGSTSQCKFFCVPRDFTAFALQYHLW
KNEEGWFRIAENMGFQCLKIESKDPRLDGIDSLSGTEIPLHYICKLATHAIHLVVFHERS
GNYLWHGHLRLKEHIDRKFVPFRKLQFGRYPGAFDRPELQQVTVDGLEVLIPKDPMHFVE
EVPHSRFIECRYKEARAFFQQYLDDNTVEAVAFRKSAKELLQLAAKTLNKLGVPFWLSSG
TCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQDAGL
PLKHKFGKVEDSLELSFQGK
DDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIE
ANYGKTWKIPVKTWDWKRSPPNVQPNGIWPISEWDEVIQLY
Sequence length 461
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Mannose type O-glycan biosynthesis
Metabolic pathways
 
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
39
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal recessive limb-girdle muscular dystrophy type 2M Likely pathogenic; Pathogenic rs537001725, rs1554752862, rs2539411480, rs2539404849, rs2539404585, rs2539405255, rs2539710360, rs2539402514, rs2539494660, rs2539412353, rs2539334508, rs2538817842, rs2539657265, rs398123555, rs119463996
View all (15 more)
RCV002492573
RCV002309809
RCV002309878
RCV002310020
RCV002308012
View all (26 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cardiovascular phenotype Pathogenic; Likely pathogenic rs398123555, rs2132704748, rs1383324318, rs1430884213, rs119463990, rs119463991, rs119463992, rs267606814, rs746763506, rs750176716, rs1554761402, rs1564301594, rs1588315166, rs1203741361, rs398123557 RCV002329753
RCV004996048
RCV002333953
RCV002412257
RCV003372594
View all (11 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Dilated cardiomyopathy 1X Pathogenic; Likely pathogenic rs557096550, rs1828477244, rs2133163213, rs369797361, rs398123555, rs764125009, rs537001725, rs1383324318, rs119463990, rs587777748, rs119463991, rs119463992, rs119463993, rs119464997, rs267606814
View all (46 more)
RCV001594453
RCV003476408
RCV003473925
RCV003470875
RCV003470903
View all (60 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
FKTN-related disorder Pathogenic; Likely pathogenic rs398123555, rs1588315166, rs767865405 RCV000778871
RCV004528306
RCV004536091
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cardiomyopathy Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOMYOPATHY, DILATED Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOMYOPATHY, DILATED, 1B Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOMYOPATHY, DILATED, 1X CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Absence of septum pellucidum Absence Of Septum Pellucidum HPO_DG
★☆☆☆☆
Found in Text Mining only
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only
Agyria Agyria HPO_DG
★☆☆☆☆
Found in Text Mining only
alpha-Dystroglycanopathies alpha-Dystroglycanopathy CTD_human_DG
★☆☆☆☆
Found in Text Mining only
Anophthalmos Syndromic microphthalmia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anus, Imperforate Imperforate anus HPO_DG
★☆☆☆☆
Found in Text Mining only
Astrocytoma Astrocytoma BEFREE 22264285
★☆☆☆☆
Found in Text Mining only
Astrocytoma Astrocytoma Pubtator 22264285 Associate
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect HPO_DG
★☆☆☆☆
Found in Text Mining only