Gene Gene information from NCBI Gene database.
Entrez ID 2202
Gene name EGF containing fibulin extracellular matrix protein 1
Gene symbol EFEMP1
Synonyms (NCBI Gene)
ARCL1DDHRDDRADFBLN3FBNLFIBL-3GLC1HMLVTMTLVS1-5
Chromosome 2
Chromosome location 2p16.1
Summary This gene encodes a member of the fibulin family of extracellular matrix glycoproteins. Like all members of this family, the encoded protein contains tandemly repeated epidermal growth factor-like repeats followed by a C-terminus fibulin-type domain. This
SNPs SNP information provided by dbSNP.
3
SNP ID Visualize variation Clinical significance Consequence
rs765517862 A>G,T Pathogenic Synonymous variant, coding sequence variant, stop gained
rs1572850869 CATGC>- Pathogenic Coding sequence variant, frameshift variant
rs1572851186 A>G Likely-pathogenic, uncertain-significance Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
176
miRTarBase ID miRNA Experiments Reference
MIRT953659 hsa-miR-101 CLIP-seq
MIRT953660 hsa-miR-1225-5p CLIP-seq
MIRT953661 hsa-miR-1226 CLIP-seq
MIRT953662 hsa-miR-1273e CLIP-seq
MIRT953663 hsa-miR-133a CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
28
GO ID Ontology Definition Evidence Reference
GO:0005006 Function Epidermal growth factor receptor activity IDA 19804359
GO:0005154 Function Epidermal growth factor receptor binding IDA 19804359
GO:0005201 Function Extracellular matrix structural constituent IBA
GO:0005201 Function Extracellular matrix structural constituent RCA 20551380, 25037231, 28675934
GO:0005509 Function Calcium ion binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601548 3218 ENSG00000115380
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q12805
Protein name EGF-containing fibulin-like extracellular matrix protein 1 (Extracellular protein S1-5) (Fibrillin-like protein) (Fibulin-3) (FIBL-3)
Protein function Binds EGFR, the EGF receptor, inducing EGFR autophosphorylation and the activation of downstream signaling pathways. May play a role in cell adhesion and migration. May function as a negative regulator of chondrocyte differentiation. In the olfa
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07645 EGF_CA 44 85 Calcium-binding EGF domain Domain
PF07645 EGF_CA 173 212 Calcium-binding EGF domain Domain
PF12662 cEGF 234 257 Complement Clr-like EGF-like Domain
PF12662 cEGF 274 297 Complement Clr-like EGF-like Domain
PF07645 EGF_CA 334 381 Calcium-binding EGF domain Domain
Tissue specificity TISSUE SPECIFICITY: In the eye, associated with photoreceptor outer and inner segment regions, the nerve fiber layer, outer nuclear layer and inner and outer plexiform layers of the retina. {ECO:0000269|PubMed:12242346, ECO:0000269|PubMed:20005202}.
Sequence
MLKALFLTMLTLALVKSQDTEETITYTQCTDGYEWDPVRQQCKDIDECDIVPDACKGGMK
CVNHYGGYLCLPKTAQIIVNNEQPQ
QETQPAEGTSGATTGVVAASSMATSGVLPGGGFVA
SAAAVAGPEMQTGRNNFVIRRNPADPQRIPSNPSHRIQCAAGYEQSEHNVCQDIDECTAG
THNCRADQVCINLRGSFACQCPPGYQKRGEQC
VDIDECTIPPYCHQRCVNTPGSFYCQCS
PGFQLAANNYTCVDINE
CDASNQCAQQCYNILGSFICQCNQGYELSSDRLNCEDIDECRT
SSYLCQYQCVNEPGKFSCMCPQGYQVVRSRTCQDINECETTNECREDEMCWNYHGGFRCY
PRNPCQDPYILTPENRCVCPV
SNAMCRELPQSIVYKYMSIRSDRSVPSDIFQIQATTIYA
NTINTFRIKSGNENGEFYLRQTSPVSAMLVLVKSLSGPREHIVDLEMLTVSSIGTFRTSS
VLRLTIIVGPFSF
Sequence length 493
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Molecules associated with elastic fibres
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
53
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Blindness Likely pathogenic rs1553348960 RCV000626733
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cutis laxa Pathogenic rs2104369155 RCV001354060
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cutis laxa, autosomal recessive, type 1d Pathogenic rs2104369155, rs765517862, rs1572850869 RCV003991511
RCV003991509
RCV003991508
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Doyne honeycomb retinal dystrophy Likely pathogenic; Pathogenic rs121434491 RCV000008539
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AMYOTROPHIC LATERAL SCLEROSIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANDROGENETIC ALOPECIA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARACHNODACTYLY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma CTD_human_DG 17671114
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 19208748
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 19804359
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma BEFREE 19208748
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Basal Cell Adenocarcinoma CTD_human_DG 17671114
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Oxyphilic Adenocarcinoma CTD_human_DG 17671114
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Tubular Adenocarcinoma CTD_human_DG 17671114
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 24080855
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma BEFREE 21744999
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration BEFREE 12242346, 12427233, 15218514, 15512998, 17664227, 17666404, 22031286, 22581936, 23230284, 23365660, 25481286, 26427406, 28264101, 28622396, 29097185
★☆☆☆☆
Found in Text Mining only