Gene Gene information from NCBI Gene database.
Entrez ID 2189
Gene name FA complementation group G
Gene symbol FANCG
Synonyms (NCBI Gene)
FAGXRCC9
Chromosome 9
Chromosome location 9p13.3
Summary The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FAN
SNPs SNP information provided by dbSNP.
17
SNP ID Visualize variation Clinical significance Consequence
rs121434425 C>A Pathogenic Coding sequence variant, stop gained
rs121434426 G>A Pathogenic Coding sequence variant, stop gained
rs149616199 C>A,G Pathogenic Splice donor variant
rs200479612 C>G,T Pathogenic Splice donor variant
rs397507559 AAACACCTCA>- Pathogenic Frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
15
miRTarBase ID miRNA Experiments Reference
MIRT006898 hsa-miR-23a-3p ImmunoblotLuciferase reporter assayqRT-PCRWestern blot 21750350
MIRT016405 hsa-miR-193b-3p Microarray 20304954
MIRT037687 hsa-miR-744-5p CLASH 23622248
MIRT989177 hsa-miR-1238 CLIP-seq
MIRT989178 hsa-miR-18a CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
24
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin IDA 22343915
GO:0001541 Process Ovarian follicle development IEA
GO:0003684 Function Damaged DNA binding TAS 9806548
GO:0005515 Function Protein binding IPI 10627486, 10652215, 11063725, 12649160, 16189514, 17060495, 17289582, 17396147, 19102630, 22458338, 28514442, 31467278, 32296183, 32814053, 33961781, 37398436
GO:0005634 Component Nucleus IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602956 3588 ENSG00000221829
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O15287
Protein name Fanconi anemia group G protein (Protein FACG) (DNA repair protein XRCC9)
Protein function DNA repair protein that may operate in a postreplication repair or a cell cycle checkpoint function. May be implicated in interstrand DNA cross-link repair and in the maintenance of normal chromosome stability. Candidate tumor suppressor gene.
PDB 7KZP , 7KZQ , 7KZR , 7KZS , 7KZT , 7KZV
Family and domains
Tissue specificity TISSUE SPECIFICITY: Highly expressed in testis and thymus. Found in lymphoblasts.
Sequence
MSRQTTSVGSSCLDLWREKNDRLVRQAKVAQNSGLTLRRQQLAQDALEGLRGLLHSLQGL
PAAVPVLPLELTVTCNFIILRASLAQGFTEDQAQDIQRSLERVLETQEQQGPRLEQGLRE
LWDSVLRASCLLPELLSALHRLVGLQAALWLSADRLGDLALLLETLNGSQSGASKDLLLL
LKTWSPPAEELDAPLTLQDAQGLKDVLLTAFAYRQGLQELITGNPDKALSSLHEAASGLC
PRPVLVQVYTALGSCHRKMGNPQRALLYLVAALKEGSAWGPPLLEASRLYQQLGDTTAEL
ESLELLVEALNVPCSSKAPQFLIEVELLLPPPDLASPLHCGTQSQTKHILASRCLQTGRA
GDAAEHYLDLLALLLDSSEPRFSPPPSPPGPCMPEVFLEAAVALIQAGRAQDALTLCEEL
LSRTSSLLPKMSRLWEDARKGTKELPYCPLWVSATHLLQGQAWVQLGAQKVAISEFSRCL
ELLFRATPEEKEQGAAFNCEQGCKSDAALQQLRAAALISRGLEWVASGQDTKALQDFLLS
VQMCPGNRDTYFHLLQTLKRLDRRDEATALWWRLEAQTKGSHEDALWSLPLYLESYLSWI
RPSDRDAFLEEFRTSLPKSCDL
Sequence length 622
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Fanconi anemia pathway   Fanconi Anemia Pathway
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
20
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of blood and blood-forming tissues Likely pathogenic rs2131056701 RCV001814313
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Carcinoma of pancreas Likely pathogenic rs2131056131 RCV001391221
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
FANCG-related disorder Likely pathogenic; Pathogenic rs768083289, rs149616199, rs397507560, rs2131055853, rs761519737 RCV003395526
RCV004748504
RCV003904814
RCV003416907
RCV004749616
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Fanconi anemia Likely pathogenic; Pathogenic rs767443643, rs1829062071, rs2131056701, rs2131051951, rs2131053943, rs748730134, rs755363896, rs2131055360, rs149721361, rs2131056614, rs2131058481, rs2131058553, rs1829123346, rs886063896, rs2131053817
View all (106 more)
RCV001377115
RCV001379948
RCV001378690
RCV001385161
RCV001386446
View all (123 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Chronic lymphocytic leukemia/small lymphocytic lymphoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Fanconi anemia complementation group A Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute monocytic leukemia Monocytic Leukemia GENOMICS_ENGLAND_DG 28297620
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 16762635
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 23752274 Stimulate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia Aplastic Aplastic anemia Pubtator 11110674 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Hemolytic Hemolytic anemia Pubtator 11167740, 35052418, 36894310 Associate
★☆☆☆☆
Found in Text Mining only
Anus, Imperforate Imperforate anus HPO_DG
★☆☆☆☆
Found in Text Mining only
Aplastic Anemia Aplastic anemia BEFREE 12239156
★☆☆☆☆
Found in Text Mining only
Astigmatism Astigmatism HPO_DG
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect HPO_DG
★☆☆☆☆
Found in Text Mining only