Gene Gene information from NCBI Gene database.
Entrez ID 2184
Gene name Fumarylacetoacetate hydrolase
Gene symbol FAH
Synonyms (NCBI Gene)
-
Chromosome 15
Chromosome location 15q25.1
Summary This gene encodes the last enzyme in the tyrosine catabolism pathway. FAH deficiency is associated with Type 1 hereditary tyrosinemia (HT). [provided by RefSeq, Jul 2008]
SNPs SNP information provided by dbSNP.
72
SNP ID Visualize variation Clinical significance Consequence
rs11555096 C>A,T Other, pathogenic, benign Missense variant, coding sequence variant, synonymous variant
rs36122289 G>A Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs80338894 G>A,T Pathogenic Missense variant, coding sequence variant, synonymous variant
rs80338895 G>C,T Pathogenic Splice acceptor variant
rs80338897 A>T Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
72
miRTarBase ID miRNA Experiments Reference
MIRT019924 hsa-miR-375 Microarray 20215506
MIRT025492 hsa-miR-34a-5p Proteomics 21566225
MIRT030485 hsa-miR-24-3p Microarray 19748357
MIRT048789 hsa-miR-93-5p CLASH 23622248
MIRT975314 hsa-miR-1305 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
18
GO ID Ontology Definition Evidence Reference
GO:0003824 Function Catalytic activity IEA
GO:0004334 Function Fumarylacetoacetase activity IBA
GO:0004334 Function Fumarylacetoacetase activity IEA
GO:0004334 Function Fumarylacetoacetase activity TAS 1998338
GO:0005515 Function Protein binding IPI 25416956, 32296183
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613871 3579 ENSG00000103876
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P16930
Protein name Fumarylacetoacetase (FAA) (EC 3.7.1.2) (Beta-diketonase) (Fumarylacetoacetate hydrolase)
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF09298 FAA_hydrolase_N 15 118 Fumarylacetoacetase N-terminal Domain
PF01557 FAA_hydrolase 123 413 Fumarylacetoacetate (FAA) hydrolase family Family
Tissue specificity TISSUE SPECIFICITY: Mainly expressed in liver and kidney. Lower levels are also detected in many other tissues.
Sequence
Sequence length 419
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Tyrosine metabolism
Metabolic pathways
  Tyrosine catabolism
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
31
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Beta-D-mannosidosis Likely pathogenic rs1057517201 RCV004544721
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
FAH-related disorder Likely pathogenic; Pathogenic rs80338901, rs121965075, rs80338895, rs80338898 RCV003407317
RCV003407318
RCV004752701
RCV004752715
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Familial cancer of breast Pathogenic rs1555442385 RCV005901511
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Nonpapillary renal cell carcinoma Pathogenic rs2142107894 RCV005922534
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BETA-MANNOSIDOSIS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adult Fanconi syndrome Fanconi syndrome HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 10098735
★☆☆☆☆
Found in Text Mining only
Carcinoma Carcinoma BEFREE 9095403
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 11476670 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 33218190 Stimulate
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 34704422 Inhibit
★☆☆☆☆
Found in Text Mining only
Carcinoma Ovarian Epithelial Epithelial ovarian carcinoma Pubtator 37890478 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy Pubtator 24016420 Associate
★☆☆☆☆
Found in Text Mining only
Cholestasis Cholestasis GENOMICS_ENGLAND_DG 15759101
★☆☆☆☆
Found in Text Mining only
Cirrhosis Cirrhosis BEFREE 11196105, 27397503, 27510266, 27855279
★☆☆☆☆
Found in Text Mining only