Gene Gene information from NCBI Gene database.
Entrez ID 2178
Gene name FA complementation group E
Gene symbol FANCE
Synonyms (NCBI Gene)
FACEFAE
Chromosome 6
Chromosome location 6p21.31
Summary The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FAN
SNPs SNP information provided by dbSNP.
7
SNP ID Visualize variation Clinical significance Consequence
rs121434505 C>T Pathogenic Non coding transcript variant, stop gained, coding sequence variant
rs121434506 C>A,T Pathogenic Non coding transcript variant, stop gained, coding sequence variant, synonymous variant
rs587778337 C>-,CC Not-provided, pathogenic Non coding transcript variant, intron variant, frameshift variant, coding sequence variant
rs754850404 G>- Likely-pathogenic Initiator codon variant, coding sequence variant, non coding transcript variant, frameshift variant
rs763151358 C>T Likely-pathogenic, uncertain-significance Missense variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
124
miRTarBase ID miRNA Experiments Reference
MIRT016378 hsa-miR-193b-3p Microarray 20304954
MIRT756240 hsa-miR-26a-5p Luciferase reporter assayWestern blottingqRT-PCR 34804856
MIRT989060 hsa-miR-1254 CLIP-seq
MIRT989061 hsa-miR-1255a CLIP-seq
MIRT989062 hsa-miR-1255b CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
20
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin IDA 22343915
GO:0001541 Process Ovarian follicle development IEA
GO:0005515 Function Protein binding IPI 12649160, 33961781, 35512704
GO:0005634 Component Nucleus IEA
GO:0005634 Component Nucleus NAS 11001585
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613976 3586 ENSG00000112039
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9HB96
Protein name Fanconi anemia group E protein (Protein FACE)
Protein function As part of the Fanconi anemia (FA) complex functions in DNA cross-links repair. Required for the nuclear accumulation of FANCC and provides a critical bridge between the FA complex and FANCD2. {ECO:0000269|PubMed:12093742, ECO:0000269|PubMed:172
PDB 2ILR , 7KZP , 7KZQ , 7KZR , 7KZS , 7KZT , 7KZV
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF11510 FA_FANCE 274 535 Fanconi Anaemia group E protein FANCE Family
Sequence
MATPDAGLPGAEGVEPAPWAQLEAPARLLLQALQAGPEGARRGLGVLRALGSRGWEPFDW
GRLLEALCREEPVVQGPDGRLELKPLLLRLPRICQRNLMSLLMAVRPSLPESGLLSVLQI
AQQDLAPDPDAWLRALGELLRRDLGVGTSMEGASPLSERCQRQLQSLCRGLGLGGRRLKS
PQAPDPEEEENRDSQQPGKRRKDSEEEAASPEGKRVPKRLRCWEEEEDHEKERPEHKSLE
SLADGGSASPIKDQPVMAVKTGEDGSNLDDAKGLAESLELPKAIQDQLPRLQQLLKTLEE
GLEGLEDAPPVELQLLHECSPSQMDLLCAQLQLPQLSDLGLLRLCTWLLALSPDLSLSNA
TVLTRSLFLGRILSLTSSASRLLTTALTSFCAKYTYPVCSALLDPVLQAPGTGPAQTELL
CCLVKMESLEPDAQVLMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKG
LAATTSMAYAKLMLTVMTKYQANITETQRLGLAMALEPNTTFLRKSLKAALKHLG
P
Sequence length 536
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Fanconi anemia pathway   Fanconi Anemia Pathway
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
24
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
FANCE-related disorder Likely pathogenic; Pathogenic rs916124670, rs775076977 RCV003391451
RCV004751661
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Fanconi anemia Likely pathogenic; Pathogenic rs755938406, rs2533657776, rs775076977 RCV002266522
RCV003331879
RCV004768556
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Fanconi anemia complementation group E Likely pathogenic; Pathogenic rs1767163932, rs2150895088, rs752690798, rs1272613429, rs2150896309, rs773363446, rs1479445348, rs1767507722, rs2150885915, rs587778337, rs1561792535, rs2150889955, rs866005940, rs121434505, rs121434506
View all (48 more)
RCV001377608
RCV001377491
RCV001387796
RCV001383881
RCV001390298
View all (61 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Sarcoma Likely pathogenic; Pathogenic rs775076977 RCV005901613
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Carcinoma of colon Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Carcinoma of pancreas Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colorectal cancer Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute monocytic leukemia Monocytic Leukemia GENOMICS_ENGLAND_DG 28297620
★☆☆☆☆
Found in Text Mining only
Amnesia Amnesia BEFREE 30417089
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia Hemolytic Hemolytic anemia Pubtator 17308347 Associate
★☆☆☆☆
Found in Text Mining only
Anus, Imperforate Imperforate anus HPO_DG
★☆☆☆☆
Found in Text Mining only
Astigmatism Astigmatism HPO_DG
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect HPO_DG
★☆☆☆☆
Found in Text Mining only
Azoospermia Azoospermia HPO_DG
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 26277624
★☆☆☆☆
Found in Text Mining only