Gene Gene information from NCBI Gene database.
Entrez ID 2162
Gene name Coagulation factor XIII A chain
Gene symbol F13A1
Synonyms (NCBI Gene)
F13A
Chromosome 6
Chromosome location 6p25.1
Summary This gene encodes the coagulation factor XIII A subunit. Coagulation factor XIII is the last zymogen to become activated in the blood coagulation cascade. Plasma factor XIII is a heterotetramer composed of 2 A subunits and 2 B subunits. The A subunits hav
SNPs SNP information provided by dbSNP.
20
SNP ID Visualize variation Clinical significance Consequence
rs2815822 T>A,C,G Pathogenic, benign Intron variant
rs121913064 C>A,T Pathogenic Missense variant, coding sequence variant
rs121913065 G>A Pathogenic Stop gained, coding sequence variant
rs121913066 G>A,T Pathogenic Stop gained, coding sequence variant, synonymous variant
rs121913067 G>A,C,T Pathogenic Missense variant, coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
52
miRTarBase ID miRNA Experiments Reference
MIRT974286 hsa-miR-105 CLIP-seq
MIRT974287 hsa-miR-1200 CLIP-seq
MIRT974288 hsa-miR-1260 CLIP-seq
MIRT974289 hsa-miR-1260b CLIP-seq
MIRT974290 hsa-miR-1273f CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
ETS1 Unknown 10037697
GATA1 Unknown 10037697
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
24
GO ID Ontology Definition Evidence Reference
GO:0003810 Function Protein-glutamine gamma-glutamyltransferase activity IBA
GO:0003810 Function Protein-glutamine gamma-glutamyltransferase activity IDA 27363989
GO:0003810 Function Protein-glutamine gamma-glutamyltransferase activity IEA
GO:0003810 Function Protein-glutamine gamma-glutamyltransferase activity TAS 2877456
GO:0005515 Function Protein binding IPI 32814053
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
134570 3531 ENSG00000124491
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P00488
Protein name Coagulation factor XIII A chain (Coagulation factor XIIIa) (EC 2.3.2.13) (Protein-glutamine gamma-glutamyltransferase A chain) (Transglutaminase A chain)
Protein function Factor XIII is activated by thrombin and calcium ion to a transglutaminase that catalyzes the formation of gamma-glutamyl-epsilon-lysine cross-links between fibrin chains, thus stabilizing the fibrin clot. Also cross-link alpha-2-plasmin inhibit
PDB 1EVU , 1EX0 , 1F13 , 1FIE , 1GGT , 1GGU , 1GGY , 1QRK , 4KTY , 5MHL , 5MHM , 5MHN , 5MHO , 8CMT , 8CMU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00868 Transglut_N 45 165 Transglutaminase family Domain
PF01841 Transglut_core 284 398 Transglutaminase-like superfamily Family
PF00927 Transglut_C 519 623 Transglutaminase family, C-terminal ig like domain Domain
PF00927 Transglut_C 631 728 Transglutaminase family, C-terminal ig like domain Domain
Sequence
MSETSRTAFGGRRAVPPNNSNAAEDDLPTVELQGVVPRGVNLQEFLNVTSVHLFKERWDT
NKVDHHTDKYENNKLIVRRGQSFYVQIDFSRPYDPRRDLFRVEYVIGRYPQENKGTYIPV
PIVSELQSGKWGAKIVMREDRSVRLSIQSSPKCIVGKFRMYVAVW
TPYGVLRTSRNPETD
TYILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSYGQFEDGILDTCL
YVMDRAQMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSWDNIYAYGVPPSAWTGSVDIL
LEYRSSENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFLEEDGN
VNSKLTKDSVWNYHCWNEAWMTRPDLPVGFGGWQAVDS
TPQENSDGMYRCGPASVQAIKH
GHVCFQFDAPFVFAEVNSDLIYITAKKDGTHVVENVDATHIGKLIVTKQIGGDGMMDITD
TYKFQEGQEEERLALETALMYGAKKPLNTEGVMKSRSNVDMDFEVENAVLGKDFKLSITF
RNNSHNRYTITAYLSANITFYTGVPKAEFKKETFDVTLEPLSFKKEAVLIQAGEYMGQLL
EQASLHFFVTARINETRDVLAKQ
KSTVLTIPEIIIKVRGTQVVGSDMTVTVQFTNPLKET
LRNVWVHLDGPGVTRPMKKMFREIRPNSTVQWEEVCRPWVSGHRKLIASMSSDSLRHVYG
ELDVQIQR
RPSM
Sequence length 732
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Complement and coagulation cascades
Coronavirus disease - COVID-19
  Platelet degranulation
Common Pathway of Fibrin Clot Formation
Interleukin-4 and Interleukin-13 signaling
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
33
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
F13A1-related disorder Pathogenic; Likely pathogenic rs1479557022, rs760818476, rs372296352, rs267606789, rs774669729 RCV003410898
RCV003901095
RCV004755742
RCV003415716
RCV003894441
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Factor XIII, A subunit, deficiency of Pathogenic; Likely pathogenic rs1760997136, rs2113123881, rs2480618246, rs2480490515, rs1757202231, rs1176119481, rs2480385304, rs2480651992, rs760818476, rs2113184331, rs121913064, rs121913065, rs121913066, rs121913067, rs121913069
View all (19 more)
RCV001783234
RCV002052271
RCV003126312
RCV003145090
RCV003313841
View all (29 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Gastric cancer Pathogenic rs121913069 RCV005887536
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hereditary factor XIII deficiency disease Pathogenic rs1561673120 RCV000785755
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormal bleeding Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTERIOSCLEROSIS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 8634442
★☆☆☆☆
Found in Text Mining only
Alzheimer`s Disease Alzheimer disease GWASDB_DG 21116278
★☆☆☆☆
Found in Text Mining only
Alzheimer`s Disease Alzheimer disease GWASCAT_DG 26830138
★☆☆☆☆
Found in Text Mining only
Angina Unstable Angina pectoris Pubtator 25693916 Inhibit
★☆☆☆☆
Found in Text Mining only
Angina Unstable Angina pectoris Pubtator 25693916 Associate
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Abdominal Aortic aneurysm Pubtator 25384012 Associate
★☆☆☆☆
Found in Text Mining only
Arterial Occlusive Diseases Arterial occlusive disease Pubtator 10627467 Associate
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 11834540, 15507206
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Arthritis Psoriatic Psoriatic arthritis Pubtator 8838494 Associate
★☆☆☆☆
Found in Text Mining only
Asthma Asthma BEFREE 24934276
★★☆☆☆
Found in Text Mining + Unknown/Other Associations