Gene Gene information from NCBI Gene database.
Entrez ID 2161
Gene name Coagulation factor XII
Gene symbol F12
Synonyms (NCBI Gene)
HAE3HAEXHAF
Chromosome 5
Chromosome location 5q35.3
Summary This gene encodes coagulation factor XII which circulates in blood as a zymogen. This single chain zymogen is converted to a two-chain serine protease with an heavy chain (alpha-factor XIIa) and a light chain. The heavy chain contains two fibronectin-type
miRNA miRNA information provided by mirtarbase database.
1
miRTarBase ID miRNA Experiments Reference
MIRT1988659 hsa-miR-4297 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
ESR1 Activation 9794469
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
36
GO ID Ontology Definition Evidence Reference
GO:0002353 Process Plasma kallikrein-kinin cascade IDA 6793628, 18725990
GO:0002542 Process Factor XII activation IDA 18725990
GO:0004252 Function Serine-type endopeptidase activity IBA
GO:0004252 Function Serine-type endopeptidase activity IDA 6793628, 18725990
GO:0004252 Function Serine-type endopeptidase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
610619 3530 ENSG00000131187
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P00748
Protein name Coagulation factor XII (EC 3.4.21.38) (Hageman factor) (HAF) [Cleaved into: Coagulation factor XIIa heavy chain; Beta-factor XIIa part 1; Coagulation factor XIIa light chain (Beta-factor XIIa part 2)]
Protein function Factor XII is a serum glycoprotein that participates in the initiation of blood coagulation, fibrinolysis, and the generation of bradykinin and angiotensin. Prekallikrein is cleaved by factor XII to form kallikrein, which then cleaves factor XII
PDB 4BDW , 4BDX , 4XDE , 4XE4 , 6B74 , 6B77 , 6GT6 , 6L63 , 6QF7 , 6SZW , 6X0S , 6X0T , 7FBP , 7PRJ , 7PRK , 8OS5 , 8R8D
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00040 fn2 47 88 Fibronectin type II domain Domain
PF00008 EGF 98 129 EGF-like domain Domain
PF00039 fn1 135 170 Fibronectin type I domain Domain
PF00008 EGF 178 208 EGF-like domain Domain
PF00051 Kringle 217 295 Kringle domain Domain
PF00089 Trypsin 373 609 Trypsin Domain
Sequence
Sequence length 615
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Complement and coagulation cascades   Intrinsic Pathway of Fibrin Clot Formation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
35
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Angioedema Pathogenic rs118204456 RCV000414902
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
F12-related disorder Likely pathogenic rs1554097246 RCV004732916
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
FACTOR XII (LOCARNO) Pathogenic rs118204454 RCV000001224
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
FACTOR XII (WASHINGTON D.C.) Pathogenic rs1157280571 RCV000001223
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANGIOEDEMA, HEREDITARY, 3 HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANGIOEDEMAS, HEREDITARY CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colon adenocarcinoma Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Cerebrovascular Accidents Stroke BEFREE 31263257
★☆☆☆☆
Found in Text Mining only
Acute Coronary Syndrome Coronary Syndrome LHGDN 15567455
★☆☆☆☆
Found in Text Mining only
Alexander Disease Alexander disease Pubtator 37866310 Associate
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 37646115 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Sickle Cell Sickle cell anemia Pubtator 11719358 Associate
★☆☆☆☆
Found in Text Mining only
Angioedema Angioedema Pubtator 17186468, 25196353, 26395818, 36787826 Associate
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Angioedemas Hereditary Angioedema Pubtator 17186468, 25401373, 26395818, 27271546, 30394658, 31771982, 33036649, 33348403, 33593719, 33799813, 36203598, 36720386, 36787826 Associate
★☆☆☆☆
Found in Text Mining only
Angioedemas, Hereditary Angioedema BEFREE 16638441, 17085286, 17186468, 19178407, 19474702, 19843402, 20384613, 25134986, 25790805, 27905115, 28251901, 28601681, 28795768, 29128335, 3965500
View all (1 more)
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Angioedemas, Hereditary Angioedema CLINVAR_DG 16638441, 17186468, 17825897, 19178938, 19474702, 20490261, 25744496, 25790805
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Angioedemas, Hereditary Angioedema GENOMICS_ENGLAND_DG 19178938
★★☆☆☆
Found in Text Mining + Unknown/Other Associations