Gene Gene information from NCBI Gene database.
Entrez ID 2160
Gene name Coagulation factor XI
Gene symbol F11
Synonyms (NCBI Gene)
FXIPTA
Chromosome 4
Chromosome location 4q35.2
Summary This gene encodes coagulation factor XI of the blood coagulation cascade. This protein is present in plasma as a zymogen, which is a unique plasma coagulation enzyme because it exists as a homodimer consisting of two identical polypeptide chains linked by
SNPs SNP information provided by dbSNP.
64
SNP ID Visualize variation Clinical significance Consequence
rs28934608 C>T Likely-pathogenic Non coding transcript variant, missense variant, coding sequence variant, genic downstream transcript variant
rs121965063 G>T Pathogenic Stop gained, coding sequence variant, non coding transcript variant
rs121965064 T>C Pathogenic, pathogenic-likely-pathogenic Coding sequence variant, genic downstream transcript variant, missense variant, non coding transcript variant, intron variant
rs121965066 C>A Likely-pathogenic Stop gained, coding sequence variant, non coding transcript variant
rs121965067 C>A Pathogenic Coding sequence variant, genic downstream transcript variant, missense variant, 3 prime UTR variant, downstream transcript variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
38
miRTarBase ID miRNA Experiments Reference
MIRT974028 hsa-miR-15a CLIP-seq
MIRT974029 hsa-miR-15b CLIP-seq
MIRT974030 hsa-miR-16 CLIP-seq
MIRT974031 hsa-miR-195 CLIP-seq
MIRT974032 hsa-miR-424 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
33
GO ID Ontology Definition Evidence Reference
GO:0004252 Function Serine-type endopeptidase activity IEA
GO:0004252 Function Serine-type endopeptidase activity NAS 9593722
GO:0004252 Function Serine-type endopeptidase activity TAS 10823824
GO:0005515 Function Protein binding IPI 2844223, 15545266
GO:0005576 Component Extracellular region IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
264900 3529 ENSG00000088926
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P03951
Protein name Coagulation factor XI (FXI) (EC 3.4.21.27) (Plasma thromboplastin antecedent) (PTA) [Cleaved into: Coagulation factor XIa heavy chain; Coagulation factor XIa light chain]
Protein function Factor XI triggers the middle phase of the intrinsic pathway of blood coagulation by activating factor IX.
PDB 1XX9 , 1XXD , 1XXF , 1ZHM , 1ZHP , 1ZHR , 1ZJD , 1ZLR , 1ZMJ , 1ZML , 1ZMN , 1ZOM , 1ZPB , 1ZPC , 1ZPZ , 1ZRK , 1ZSJ , 1ZSK , 1ZSL , 1ZTJ , 1ZTK , 1ZTL , 2FDA , 2J8J , 2J8L , 3BG8 , 3SOR , 3SOS , 4CR5 , 4CR9 , 4CRA , 4CRB , 4CRC , 4CRD , 4CRE , 4CRF , 4CRG , 4D76 , 4D7F , 4D7G , 4NA7 , 4NA8 , 4TY6 , 4TY7 , 4WXI , 4X6M , 4X6N , 4X6O , 4X6P , 4Y8X , 4Y8Y
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00024 PAN_1 20 103 PAN domain Domain
PF00024 PAN_1 110 193 PAN domain Domain
PF00024 PAN_1 200 283 PAN domain Domain
PF00024 PAN_1 291 374 PAN domain Domain
PF00089 Trypsin 388 618 Trypsin Domain
Tissue specificity TISSUE SPECIFICITY: Isoform 2 is produced by platelets and megakaryocytes but absent from other blood cells.
Sequence
Sequence length 625
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Complement and coagulation cascades   Intrinsic Pathway of Fibrin Clot Formation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
21
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormal bleeding Likely pathogenic; Pathogenic rs756908183, rs143648758, rs201007090, rs121965063 RCV000851775
RCV000851782
RCV000851708
RCV001270535
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Clear cell carcinoma of kidney Pathogenic rs373297713 RCV005887467
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Coagulation factor deficiency syndrome Likely pathogenic; Pathogenic rs281875266 RCV000851583
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
F11-related disorder Pathogenic; Likely pathogenic rs140190776, rs786204429, rs786204724, rs375422404, rs121965063, rs121965064, rs941166157, rs2477435655, rs1220869989 RCV003898366
RCV003416050
RCV003947448
RCV003409399
RCV003914828
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CHRONIC THROMBOEMBOLIC PULMONARY HYPERTENSION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL FACTOR XI DEFICIENCY ClinGen, Orphanet
ClinGen, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
COR PULMONALE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CORONARY ARTERY DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations