Gene Gene information from NCBI Gene database.
Entrez ID 2138
Gene name EYA transcriptional coactivator and phosphatase 1
Gene symbol EYA1
Synonyms (NCBI Gene)
BOPBORBOS1OFC1OTFCS
Chromosome 8
Chromosome location 8q13.3
Summary This gene encodes a member of the eyes absent (EYA) family of proteins. The encoded protein may play a role in the developing kidney, branchial arches, eye, and ear. Mutations of this gene have been associated with branchiootorenal dysplasia syndrome, bra
SNPs SNP information provided by dbSNP.
50
SNP ID Visualize variation Clinical significance Consequence
rs121909195 G>A,C Pathogenic Missense variant, stop gained, coding sequence variant
rs121909196 C>T Pathogenic Missense variant, coding sequence variant
rs121909197 T>C Pathogenic Missense variant, coding sequence variant
rs121909198 C>T Pathogenic Intron variant, coding sequence variant, missense variant
rs121909199 C>T Likely-benign, uncertain-significance, benign, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
66
miRTarBase ID miRNA Experiments Reference
MIRT000035 hsa-miR-562 Luciferase reporter assay 19789318
MIRT973690 hsa-miR-101 CLIP-seq
MIRT973691 hsa-miR-1243 CLIP-seq
MIRT973692 hsa-miR-128 CLIP-seq
MIRT973693 hsa-miR-2278 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
61
GO ID Ontology Definition Evidence Reference
GO:0001656 Process Metanephros development IEA
GO:0001657 Process Ureteric bud development IEA
GO:0001658 Process Branching involved in ureteric bud morphogenesis IEA
GO:0003151 Process Outflow tract morphogenesis IEA
GO:0003723 Function RNA binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601653 3519 ENSG00000104313
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q99502
Protein name Protein phosphatase EYA1 (EC 3.1.3.16) (EC 3.1.3.48) (Eyes absent homolog 1)
Protein function Functions both as protein phosphatase and as transcriptional coactivator for SIX1, and probably also for SIX2, SIX4 and SIX5 (By similarity). Tyrosine phosphatase that dephosphorylates 'Tyr-142' of histone H2AX (H2AXY142ph) and promotes efficien
Family and domains
Tissue specificity TISSUE SPECIFICITY: In the embryo, highly expressed in kidney with lower levels in brain. Weakly expressed in lung. In the adult, highly expressed in heart and skeletal muscle. Weakly expressed in brain and liver. No expression in eye or kidney.
Sequence
MEMQDLTSPHSRLSGSSESPSGPKLGNSHINSNSMTPNGTEVKTEPMSSSETASTTADGS
LNNFSGSAIGSSSFSPRPTHQFSPPQIYPSNRPYPHILPTPSSQTMAAYGQTQFTTGMQQ
ATAYATYPQPGQPYGISSYGALWAGIKTEGGLSQSQSPGQTGFLSYGTSFSTPQPGQAPY
SYQMQGSSFTTSSGIYTGNNSLTNSSGFNSSQQDYPSYPSFGQGQYAQYYNSSPYPAHYM
TSSNTSPTTPSTNATYQLQEPPSGITSQAVTDPTAEYSTIHSPSTPIKDSDSDRLRRGSD
GKSRGRGRRNNNPSPPPDSDLERVFIWDLDETIIVFHSLLTGSYANRYGRDPPTSVSLGL
RMEEMIFNLADTHLFFNDLEECDQVHIDDVSSDDNGQDLSTYNFGTDGFPAAATSANLCL
ATGVRGGVDWMRKLAFRYRRVKEIYNTYKNNVGGLLGPAKREAWLQLRAEIEALTDSWLT
LALKALSLIHSRTNCVNILVTTTQLIPALAKVLLYGLGIVFPIENIYSATKIGKESCFER
IIQRFGRKVVYVVIGDGVEEEQGAKKHAMPFWRISSHSDLMALHHALELEYL
Sequence length 592
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Transcriptional misregulation in cancer   Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
65
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormal anterior chamber morphology Pathogenic rs121909198 RCV000008399
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Anhydramnios Pathogenic rs2128850253 RCV001807680
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Anterior segment anomalies and cataract Pathogenic rs121909197 RCV000008398
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Bilateral renal agenesis Pathogenic rs2128850253 RCV001807680
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANTERIOR CHAMBER ANOMALIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASYMMETRIC CRYING FACE ASSOCIATION Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Abnormal dermatoglyphic pattern Abnormal dermatoglyphic pattern HPO_DG
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 25816987
★☆☆☆☆
Found in Text Mining only
ANTERIOR SEGMENT ANOMALIES WITH OR WITHOUT CATARACT Anterior segment anomalies ORPHANET_DG 23840632, 9359046
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder BEFREE 23979607
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety Disorder BEFREE 23979607
★☆☆☆☆
Found in Text Mining only
Asymmetric crying face association Asymmetric crying face association BEFREE 15493068
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Asymmetric crying face association Asymmetric crying face association CTD_human_DG 15493068
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism Spectrum Disorders Autism Spectrum Disorder BEFREE 30394313
★☆☆☆☆
Found in Text Mining only
BOR syndrome BOR Syndrome Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Borderline Personality Disorder Borderline personality disorder BEFREE 20695804
★☆☆☆☆
Found in Text Mining only