Gene Gene information from NCBI Gene database.
Entrez ID 2121
Gene name EvC ciliary complex subunit 1
Gene symbol EVC
Synonyms (NCBI Gene)
DWF-1EVC1EVCL
Chromosome 4
Chromosome location 4p16.2
Summary This gene encodes a protein containing a leucine zipper and a transmembrane domain. This gene has been implicated in both Ellis-van Creveld syndrome (EvC) and Weyers acrodental dysostosis. [provided by RefSeq, Jul 2008]
SNPs SNP information provided by dbSNP.
79
SNP ID Visualize variation Clinical significance Consequence
rs35401386 G>A,C,T Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, genic downstream transcript variant, non coding transcript variant
rs41269547 A>G Benign-likely-benign, likely-benign, conflicting-interpretations-of-pathogenicity Genic upstream transcript variant, missense variant, coding sequence variant, non coding transcript variant
rs41269549 G>A Likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity Genic upstream transcript variant, missense variant, coding sequence variant, non coding transcript variant
rs41269557 G>A Likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, genic downstream transcript variant, non coding transcript variant
rs121908424 C>T Pathogenic Stop gained, coding sequence variant, genic downstream transcript variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
211
miRTarBase ID miRNA Experiments Reference
MIRT018424 hsa-miR-335-5p Microarray 18185580
MIRT042772 hsa-miR-339-5p CLASH 23622248
MIRT037807 hsa-miR-455-3p CLASH 23622248
MIRT691894 hsa-miR-2278 HITS-CLIP 23313552
MIRT691893 hsa-miR-4768-3p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
22
GO ID Ontology Definition Evidence Reference
GO:0001501 Process Skeletal system development TAS 10700184
GO:0003416 Process Endochondral bone growth IEA
GO:0003416 Process Endochondral bone growth ISS
GO:0005737 Component Cytoplasm IEA
GO:0005856 Component Cytoskeleton IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604831 3497 ENSG00000072840
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P57679
Protein name EvC complex member EVC (DWF-1) (Ellis-van Creveld syndrome protein)
Protein function Component of the EvC complex that positively regulates ciliary Hedgehog (Hh) signaling. Involved in endochondral growth and skeletal development.
Family and domains
Tissue specificity TISSUE SPECIFICITY: Found in the developing vertebral bodies, ribs, upper and lower limbs, heart, kidney, lung.
Sequence
MARGGAACKSDARLLLGRDALRPAPALLAPAVLLGAALGLGLGLWLGCRAGRQRTRHQKD
DTQNLLKNLESNAQTPSETGSPSRRRKREVQMSKDKEAVDECEPPSNSNITAFALKAKVI
YPINQKFRPLADGSSNPSLHENLKQAVLPHQPVEASPSSSLGSLSQGEKDDCSSSSSVHS
ATSDDRFLSRTFLRVNAFPEVLACESVDVDLCIYSLHLKDLLHLDTALRQEKHMMFIQIF
KMCLLDLLPKKKSDDELYQKILSKQEKDLEELEKGLQVKLSNTEMSGAGDSEYITLADVE
KKEREYSEQLIDNMEAFWKQMANIQHFLVDQFKCSSSKARQLMMTLTERMIAAEGLLCDS
QELQALDALERTMGRAHMAKVIEFLKLQVQEETRCRLAAISHGLELLAGEGKLSGRQKEE
LLTQQHKAFWQEAERFSREFVQRGKDLVTASLAHQVEGTAKLTLAQEEEQRSFLAEAQPT
ADPEKFLEAFHEVLERQRLMQCDLEEEENVRATEAVVALCQELYFSTVDTFQKFVDALFL
QTLPGMTGLPPEECDYLRQEVQENAAWQLGKSNRFRRQQWKLFQELLEQDQQVWMEECAL
SSVLQTHLREDHEGTIRGVLGRLGGLTEESTRCVLQGHDLLLRSALRRLALRGNALATLT
QMRLSGKKHLLQELREQRALEQGSSQCLDEHQWQLLRALEARVLEEASRLEEEAQQTRLQ
LQQRLLAEAQEVGQLLQQHMECAIGQALLVHARNAATKSRAKDRDDFKRTLMEAAVESVY
VTSAGVSRLVQAYYQQIGRIMEDHEERKLQHLKTLQGERMENYKLRKKQELSNPSSGSRT
AGGAHETSQAVHQRMLSQQKRFLAQFPVHQQMRLHAQQQQAGVMDLLEAQLETQLQEAEQ
NFISELAALARVPLAESKLLPAKRGLLEKPLRTKRKKPLPQERGDLGVPNNEDLASGDQT
SGSLSSKRLSQQESEAGDSGNSKKMLKRRSNL
Sequence length 992
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Hedgehog signaling pathway   Hedgehog 'on' state
Activation of SMO
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
27
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Chronic lymphocytic leukemia/small lymphocytic lymphoma Likely pathogenic; Pathogenic rs767186464 RCV005912598
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Clear cell carcinoma of kidney Likely pathogenic rs1293098417 RCV005901984
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Curry-Hall syndrome Pathogenic; Likely pathogenic rs1722986802, rs1381525157, rs767186464, rs2152387946, rs762136199, rs1553871764, rs1729663828, rs745627738, rs2152076522, rs2152076745, rs2152094799, rs2152289369, rs2152345583, rs561852174, rs2152375437
View all (162 more)
RCV001380195
RCV002611189
RCV001377982
RCV001378553
RCV001382945
View all (180 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Ellis-van Creveld syndrome Pathogenic; Likely pathogenic rs1722986802, rs1381525157, rs767186464, rs2152387946, rs762136199, rs1553871764, rs1729663828, rs745627738, rs2152076522, rs2152076745, rs2152094799, rs2152289369, rs2152345583, rs561852174, rs2152375437
View all (226 more)
RCV001312198
RCV002611189
RCV001377982
RCV001378553
RCV001382945
View all (251 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ACROFACIAL DYSOSTOSIS, WEYERS TYPE CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Achondroplasia Achondroplasia BEFREE 8661097
★☆☆☆☆
Found in Text Mining only
Acquired cubitus valgus Cubitus valgus HPO_DG
★☆☆☆☆
Found in Text Mining only
Acrofacial dysostosis, Weyers type Acrofacial Dysostosis Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute leukemia Leukemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Alveolar ridge abnormality Alveolar Ridge Abnormality HPO_DG
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect BEFREE 20659440
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect HPO_DG
★☆☆☆☆
Found in Text Mining only
Bipolar Disorder Bipolar Disorder BEFREE 25311364
★☆☆☆☆
Found in Text Mining only
Brachydactyly Brachydactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Ciliopathies Ciliopathy Pubtator 33875766 Associate
★☆☆☆☆
Found in Text Mining only