Gene Gene information from NCBI Gene database.
Entrez ID 2103
Gene name Estrogen related receptor beta
Gene symbol ESRRB
Synonyms (NCBI Gene)
DFNB35ERR beta-2ERR2ERRbERRbeta2ESRL2NR3B2
Chromosome 14
Chromosome location 14q24.3
Summary This gene encodes a protein with similarity to the estrogen receptor. Its function is unknown; however, a similar protein in mouse plays an essential role in placental development. [provided by RefSeq, Jul 2008]
SNPs SNP information provided by dbSNP.
10
SNP ID Visualize variation Clinical significance Consequence
rs121909110 C>T Pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs121909111 G>T Pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs188462546 T>C Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, non coding transcript variant, 3 prime UTR variant, missense variant
rs202023138 C>A,T Likely-pathogenic Coding sequence variant, synonymous variant, non coding transcript variant, stop gained
rs375916159 G>A,T Pathogenic Coding sequence variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
55
miRTarBase ID miRNA Experiments Reference
MIRT017698 hsa-miR-335-5p Microarray 18185580
MIRT437524 hsa-miR-19b-3p Immunoprecipitaion 22382630
MIRT527878 hsa-miR-6768-5p PAR-CLIP 22012620
MIRT527877 hsa-miR-552-3p PAR-CLIP 22012620
MIRT527876 hsa-miR-4695-5p PAR-CLIP 22012620
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
57
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin IBA
GO:0000785 Component Chromatin ISA
GO:0000793 Component Condensed chromosome ISS
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding ISS
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IDA 17920186
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602167 3473 ENSG00000119715
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O95718
Protein name Steroid hormone receptor ERR2 (ERR beta-2) (Estrogen receptor-like 2) (Estrogen-related receptor beta) (ERR-beta) (Nuclear receptor subfamily 3 group B member 2)
Protein function [Isoform 3]: Transcription factor that binds a canonical ESRRB recognition (ERRE) sequence 5'TCAAGGTCA-3' localized on promoter and enhancer of targets genes regulating their expression or their transcription activity (PubMed:17920186, PubMed:19
PDB 1LO1 , 6LIT , 6LN4
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00105 zf-C4 101 170 Zinc finger, C4 type (two domains) Domain
PF00104 Hormone_recep 236 416 Ligand-binding domain of nuclear hormone receptor Domain
Sequence
MSSDDRHLGSSCGSFIKTEPSSPSSGIDALSHHSPSGSSDASGGFGLALGTHANGLDSPP
MFAGAGLGGTPCRKSYEDCASGIMEDSAIKCEYMLNAIPKRLCLVCGDIASGYHYGVASC
EACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLK
EGVRLDRVRG
GRQKYKRRLDSESSPYLSLQISPPAKKPLTKIVSYLLVAEPDKLYAMPPPGMPEGDIKAL
TTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLLQSAWMEILILGIVYRSLPYDDKLV
YAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKALALANSDSMYIEDL
EAVQKLQDLLHEALQDYELSQRHEEPWRTGKLLLTLPLLRQTAAKAVQHFYSVKLQ
GKVP
MHKLFLEMLEAKV
Sequence length 433
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Signaling pathways regulating pluripotency of stem cells   Nuclear Receptor transcription pathway
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
16
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal recessive nonsyndromic hearing loss 35 Likely pathogenic; Pathogenic rs1485778712, rs1555342141, rs1229308767, rs121909110, rs121909111, rs1060499794, rs375916159 RCV001329257
RCV001528172
RCV000007927
RCV000007928
RCV000007929
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
ESRRB-related disorder Likely pathogenic rs1261105707 RCV003942226
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Rare genetic deafness Likely pathogenic rs727504577, rs727503041, rs876657643, rs1555344820, rs202023138 RCV000155747
RCV000150664
RCV000218592
RCV000608436
RCV000616856
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTROCYTOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATTENTION DEFICIT HYPERACTIVITY DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 19644015, 22843091
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 20515574
★☆☆☆☆
Found in Text Mining only
Arrhythmogenic Right Ventricular Dysplasia Arrhythmogenic right ventricular cardiomyopathy BEFREE 28130335
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis BEFREE 21506092
★☆☆☆☆
Found in Text Mining only
Asthma Asthma BEFREE 28672989
★☆☆☆☆
Found in Text Mining only
Autoimmune Diseases Autoimmune Diseases BEFREE 21441909, 28258823, 29282318
★☆☆☆☆
Found in Text Mining only
Autosomal recessive non-syndromic sensorineural deafness type DFNB Non-Syndromic Sensorineural Deafness Orphanet
★☆☆☆☆
Found in Text Mining only
Bicuspid Aortic Valve Disease Bicuspid aortic valve Pubtator 36071494 Associate
★☆☆☆☆
Found in Text Mining only
Brain Neoplasms Brain Neoplasms BEFREE 23028043, 25557355, 30441799
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 12527905, 19622763, 22359603, 22693611, 22723937, 23139210, 23911789, 25435372, 27363015, 29843638, 29940916, 31741180, 9070291
★☆☆☆☆
Found in Text Mining only