Gene Gene information from NCBI Gene database.
Entrez ID 2068
Gene name ERCC excision repair 2, TFIIH core complex helicase subunit
Gene symbol ERCC2
Synonyms (NCBI Gene)
COFS2CXPDEM9TFIIHTTDTTD1XPD
Chromosome 19
Chromosome location 19q13.32
Summary The nucleotide excision repair pathway is a mechanism to repair damage to DNA. The protein encoded by this gene is involved in transcription-coupled nucleotide excision repair and is an integral member of the basal transcription factor BTF2/TFIIH complex.
SNPs SNP information provided by dbSNP.
36
SNP ID Visualize variation Clinical significance Consequence
rs1799792 G>A Conflicting-interpretations-of-pathogenicity Non coding transcript variant, coding sequence variant, missense variant
rs41556519 G>A Pathogenic, likely-pathogenic Coding sequence variant, genic downstream transcript variant, non coding transcript variant, missense variant
rs121913016 G>C Conflicting-interpretations-of-pathogenicity, not-provided, pathogenic, uncertain-significance Coding sequence variant, genic downstream transcript variant, non coding transcript variant, missense variant
rs121913017 G>A,C Pathogenic Coding sequence variant, missense variant, stop gained, non coding transcript variant, genic downstream transcript variant
rs121913018 C>G Pathogenic Coding sequence variant, genic downstream transcript variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
26
miRTarBase ID miRNA Experiments Reference
MIRT050977 hsa-miR-17-5p CLASH 23622248
MIRT036466 hsa-miR-1226-3p CLASH 23622248
MIRT968362 hsa-miR-1226 CLIP-seq
MIRT968363 hsa-miR-1292 CLIP-seq
MIRT968364 hsa-miR-29a CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
HIF1A Unknown 19934262
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
87
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0000439 Component Transcription factor TFIIH core complex IDA 8692841, 8692842
GO:0000439 Component Transcription factor TFIIH core complex IEA
GO:0000462 Process Maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
GO:0001666 Process Response to hypoxia IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
126340 3434 ENSG00000104884
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P18074
Protein name General transcription and DNA repair factor IIH helicase subunit XPD (TFIIH subunit XPD) (EC 5.6.2.3) (Basic transcription factor 2 80 kDa subunit) (BTF2 p80) (CXPD) (DNA 5'-3' helicase XPD) (DNA excision repair protein ERCC-2) (DNA repair protein complem
Protein function ATP-dependent 5'-3' DNA helicase (PubMed:31253769, PubMed:8413672, PubMed:9771713). Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, not absolutely essential for minimal transcription in vitro (PubMed:100248
PDB 5IVW , 5IY6 , 5IY7 , 5IY8 , 5IY9 , 5OF4 , 6NMI , 6O9L , 6O9M , 6RO4 , 6TUN , 7AD8 , 7EGB , 7EGC , 7ENA , 7ENC , 7LBM , 7NVR , 7NVW , 7NVX , 7NVY , 7NVZ , 7NW0 , 8BVW , 8BYQ , 8EBS , 8EBT , 8EBU , 8EBV , 8EBW , 8EBX , 8EBY , 8GXQ , 8GXS , 8WAK , 8WAL , 8WAN , 8WAO , 8WAP , 8WAQ , 8WAR , 8WAS
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06733 DEAD_2 72 256 DEAD_2 Family
PF06777 HBB 269 413 Helical and beta-bridge domain Domain
PF13307 Helicase_C_2 524 700 Helicase C-terminal domain Domain
Sequence
Sequence length 760
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Basal transcription factors
Nucleotide excision repair
  Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Transcription-Coupled Nucleotide Excision Repair (TC-NER)
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
mRNA Capping
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
66
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cerebrooculofacioskeletal syndrome 2 Likely pathogenic; Pathogenic rs1476160722, rs1971844960, rs1971844830, rs1360631927, rs778479250, rs774936846, rs2123286013, rs767747355, rs2123229548, rs752510317, rs587778271, rs144564120, rs762141272, rs199643821, rs1971989621
View all (104 more)
RCV003471267
RCV003469558
RCV003470852
RCV005023184
RCV003470890
View all (118 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cervical cancer Likely pathogenic; Pathogenic rs144564120 RCV005889474
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Colon adenocarcinoma Likely pathogenic; Pathogenic rs144564120 RCV005889473
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Craniopharyngioma Likely pathogenic; Pathogenic rs750123656 RCV000761139
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, SQUAMOUS CELL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CEREBRO-OCULO-FACIO-SKELETAL SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cerebrooculofacioskeletal syndrome 1 Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
ABLEPHARON-MACROSTOMIA SYNDROME Ablepharon macrostomia syndrome BEFREE 31835126
★☆☆☆☆
Found in Text Mining only
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 19052983, 24486506
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 18349268, 21463130, 23207728
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 16150943, 24284041
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 12579497, 16571649, 18478337
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 17705814, 20232359
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Of Esophagus Esophageal Cancer BEFREE 15878910, 16571649, 18478337, 24234258
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 15896456, 20003391, 23700156, 29173771
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 16542436, 17164360
★☆☆☆☆
Found in Text Mining only