Gene Gene information from NCBI Gene database.
Entrez ID 2067
Gene name ERCC excision repair 1, endonuclease non-catalytic subunit
Gene symbol ERCC1
Synonyms (NCBI Gene)
COFS4RAD10UV20
Chromosome 19
Chromosome location 19q13.32
Summary The product of this gene functions in the nucleotide excision repair pathway, and is required for the repair of DNA lesions such as those induced by UV light or formed by electrophilic compounds including cisplatin. The encoded protein forms a heterodimer
SNPs SNP information provided by dbSNP.
8
SNP ID Visualize variation Clinical significance Consequence
rs11615 A>G Drug-response, benign Synonymous variant, coding sequence variant
rs121913027 G>A Pathogenic Coding sequence variant, stop gained
rs121913028 G>A,C Pathogenic Coding sequence variant, missense variant, synonymous variant
rs149666093 G>A,T Likely-pathogenic Missense variant, stop gained, coding sequence variant
rs150584960 C>A,T Likely-pathogenic Missense variant, stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
207
miRTarBase ID miRNA Experiments Reference
MIRT052171 hsa-let-7b-5p CLASH 23622248
MIRT038492 hsa-miR-296-3p CLASH 23622248
MIRT685170 hsa-miR-4768-3p HITS-CLIP 23313552
MIRT685169 hsa-miR-4459 HITS-CLIP 23313552
MIRT685168 hsa-miR-4433a-3p HITS-CLIP 23313552
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
E2F1 Activation 22159227
KAT5 Activation 22159227
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
71
GO ID Ontology Definition Evidence Reference
GO:0000014 Function Single-stranded DNA endodeoxyribonuclease activity IDA 7559382
GO:0000109 Component Nucleotide-excision repair complex IDA 3290851, 7559382, 8197175
GO:0000110 Component Nucleotide-excision repair factor 1 complex IBA
GO:0000110 Component Nucleotide-excision repair factor 1 complex IDA 10413517
GO:0000720 Process Pyrimidine dimer repair by nucleotide-excision repair IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
126380 3433 ENSG00000012061
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P07992
Protein name DNA excision repair protein ERCC-1
Protein function [Isoform 1]: Non-catalytic component of a structure-specific DNA repair endonuclease responsible for the 5'-incision during DNA repair. Responsible, in conjunction with SLX4, for the first step in the repair of interstrand cross-links (ICL). Par
PDB 1Z00 , 2A1I , 2A1J , 2JNW , 2JPD , 2MUT , 6SXA , 6SXB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03834 Rad10 100 213 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) Family
PF00633 HHH 259 288 Helix-hairpin-helix motif Motif
Sequence
MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
ALKELAKMCILADCTLILAWSPEEAGRYLETYK
AYEQKPADLLMEKLEQDFVSRVTECLT
TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
Sequence length 297
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Platinum drug resistance
Nucleotide excision repair
Fanconi anemia pathway
  HDR through Single Strand Annealing (SSA)
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
Dual incision in TC-NER
Fanconi Anemia Pathway
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
39
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cerebrooculofacioskeletal syndrome 4 Pathogenic; Likely pathogenic rs867518898, rs2123520960, rs150584960, rs121913027, rs121913028 RCV001783203
RCV002244103
RCV000490532
RCV000018265
RCV000018266
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cockayne syndrome Pathogenic rs121913028 RCV000252117
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AZOOSPERMIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, NON-SMALL-CELL LUNG CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Actinic keratosis Actinic keratosis BEFREE 23648546
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 16723154
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 18478337
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 20975603, 21030862, 21298384, 22374244, 23470290, 24762590, 25921119, 25926247, 28476819, 28927101, 29200955
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Of Esophagus Esophageal Cancer BEFREE 18478337, 21956434
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 20003391, 20003463, 20354815, 22415779, 23581229, 25573098, 27514406, 28128193, 28260069, 30584903, 31521181
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma CTD_human_DG 21327329
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma BEFREE 16817948
★☆☆☆☆
Found in Text Mining only
Adrenocortical carcinoma Adrenocortical carcinoma BEFREE 21045685, 29187510
★☆☆☆☆
Found in Text Mining only