Gene Gene information from NCBI Gene database.
Entrez ID 2050
Gene name EPH receptor B4
Gene symbol EPHB4
Synonyms (NCBI Gene)
CMAVM2HFASDHTKLMPHM7MYK1TYRO11
Chromosome 7
Chromosome location 7q22.1
Summary Ephrin receptors and their ligands, the ephrins, mediate numerous developmental processes, particularly in the nervous system. Based on their structures and sequence relationships, ephrins are divided into the ephrin-A (EFNA) class, which are anchored to
SNPs SNP information provided by dbSNP.
23
SNP ID Visualize variation Clinical significance Consequence
rs377702127 G>A,C Likely-pathogenic, pathogenic Synonymous variant, coding sequence variant, stop gained
rs764827256 G>A,C Likely-pathogenic Coding sequence variant, missense variant
rs769965440 G>A Likely-pathogenic, pathogenic Coding sequence variant, missense variant
rs776410552 T>C Likely-pathogenic Coding sequence variant, missense variant
rs927772349 C>A,T Pathogenic Splice donor variant
miRNA miRNA information provided by mirtarbase database.
265
miRTarBase ID miRNA Experiments Reference
MIRT006338 hsa-miR-20b-5p Luciferase reporter assay 22438230
MIRT006338 hsa-miR-20b-5p Luciferase reporter assay 22438230
MIRT006338 hsa-miR-20b-5p Luciferase reporter assay 22438230
MIRT017978 hsa-miR-335-5p Microarray 18185580
MIRT038783 hsa-miR-93-3p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
31
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001525 Process Angiogenesis IBA
GO:0001525 Process Angiogenesis IDA 12734395
GO:0001525 Process Angiogenesis IEA
GO:0001525 Process Angiogenesis IMP 28687708, 30578106
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600011 3395 ENSG00000196411
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P54760
Protein name Ephrin type-B receptor 4 (EC 2.7.10.1) (Hepatoma transmembrane kinase) (Tyrosine-protein kinase TYRO11)
Protein function Receptor tyrosine kinase which binds promiscuously transmembrane ephrin-B family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is
PDB 2BBA , 2E7H , 2HLE , 2QKQ , 2VWU , 2VWV , 2VWW , 2VWX , 2VWY , 2VWZ , 2VX0 , 2VX1 , 2X9F , 2XVD , 2YN8 , 3ZEW , 4AW5 , 4BB4 , 6FNI , 6FNJ , 6FNK , 6FNL , 6FNM
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01404 Ephrin_lbd 18 197 Ephrin receptor ligand binding domain Domain
PF07699 Ephrin_rec_like 258 304 Putative ephrin-receptor like Family
PF00041 fn3 325 417 Fibronectin type III domain Domain
PF00041 fn3 435 519 Fibronectin type III domain Domain
PF14575 EphA2_TM 541 612 Ephrin type-A receptor 2 transmembrane domain Domain
PF07714 PK_Tyr_Ser-Thr 615 874 Protein tyrosine and serine/threonine kinase Domain
PF00536 SAM_1 905 969 SAM domain (Sterile alpha motif) Domain
Tissue specificity TISSUE SPECIFICITY: Abundantly expressed in placenta but also detected in kidney, liver, lung, pancreas, skeletal muscle and heart. Expressed in primitive and myeloid, but not lymphoid, hematopoietic cells. Also observed in cell lines derived from liver,
Sequence
MELRVLLCWASLAAALEETLLNTKLETADLKWVTFPQVDGQWEELSGLDEEQHSVRTYEV
CDVQRAPGQAHWLRTGWVPRRGAVHVYATLRFTMLECLSLPRAGRSCKETFTVFYYESDA
DTATALTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVNVKTLRLGPLSKAGFYLAFQD
QGACMALLSLHLFYKKC
AQLTVNLTRFPETVPRELVVPVAGSCVVDAVPAPGPSPSLYCR
EDGQWAEQPVTGCSCAPGFEAAEGNTKCRACAQGTFKPLSGEGSCQPCPANSHSNTIGSA
VCQC
RVGYFRARTDPRGAPCTTPPSAPRSVVSRLNGSSLHLEWSAPLESGGREDLTYALR
CRECRPGGSCAPCGGDLTFDPGPRDLVEPWVVVRGLRPDFTYTFEVTALNGVSSLAT
GPV
PFEPVNVTTDREVPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPS
SVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFG
QEHHSQTQLDESEGWREQLAL
IAGTAVVGVVLVLVVIVVAVLCLRKQSNGREAEYSDKHGQYLIGHGTKVYIDPFTYEDPN
EAVREFAKEIDV
SYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRRE
FLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGM
LRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGG
KIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLP
PPPDCPTSLHQLMLDCWQKDRNARPRFPQVVSAL
DKMIRNPASLKIVARENGGASHPLLD
QRQPHYSAFGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKK
ILASVQHMK
SQAKPGTPGGTGGPAPQY
Sequence length 987
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Axon guidance   EPH-Ephrin signaling
EPHB-mediated forward signaling
Ephrin signaling
EPH-ephrin mediated repulsion of cells
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
34
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Arteriovenous malformation Pathogenic rs2116413948 RCV001526877
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Capillary malformation-arteriovenous malformation 2 Pathogenic; Likely pathogenic rs2116413904, rs2116450530, rs2116434296, rs2116432544, rs2116431583, rs767827881, rs1331371272, rs1279971868, rs761905713, rs1813296662, rs2116443777, rs2116416678, rs773967187, rs749503755, rs2485037560
View all (19 more)
RCV001788524
RCV003155430
RCV006249768
RCV001823796
RCV001839304
View all (30 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Capillary malformation-arteriovenous malformation syndrome Pathogenic rs779782731, rs2116462820, rs2485000657 RCV005601847
RCV002254420
RCV004018265
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cardiovascular phenotype Likely pathogenic; Pathogenic rs1331371272, rs746199977, rs2485035566, rs2485000821 RCV002443272
RCV002353699
RCV002364886
RCV002459621
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CAPILLARY MALFORMATION-ARTERIOVENOUS MALFORMATION Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 20061560
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 29296810
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Endometrioid Endometrial Cancer BEFREE 12562648
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 21393996
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 19738063
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 20061560
★☆☆☆☆
Found in Text Mining only
Ameloblastoma Ameloblastoma BEFREE 31021853
★☆☆☆☆
Found in Text Mining only
Anaplasia Anaplasia BEFREE 17108150
★☆☆☆☆
Found in Text Mining only
Aneuploidy Aneuploidy Pubtator 15029258 Associate
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 30944125
★☆☆☆☆
Found in Text Mining only