Gene Gene information from NCBI Gene database.
Entrez ID 2034
Gene name Endothelial PAS domain protein 1
Gene symbol EPAS1
Synonyms (NCBI Gene)
ECYT4HIF2AHLFMOP2PASD2bHLHe73
Chromosome 2
Chromosome location 2p21
Summary This gene encodes a transcription factor involved in the induction of genes regulated by oxygen, which is induced as oxygen levels fall. The encoded protein contains a basic-helix-loop-helix domain protein dimerization domain as well as a domain found in
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs137853036 G>A,T Pathogenic Coding sequence variant, missense variant
rs137853037 A>G Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
693
miRTarBase ID miRNA Experiments Reference
MIRT006962 hsa-miR-185-5p Luciferase reporter assayqRT-PCR 22745131
MIRT006962 hsa-miR-185-5p Luciferase reporter assayqRT-PCR 22745131
MIRT053030 hsa-miR-145-5p Luciferase reporter assayqRT-PCRWestern blot 23222716
MIRT053030 hsa-miR-145-5p Luciferase reporter assayqRT-PCRWestern blot 23222716
MIRT438161 hsa-miR-17-5p Luciferase reporter assay 24194900
Transcription factors Transcription factors information provided by TRRUST V2 database.
6
Transcription factor Regulation Reference
HIF3A Unknown 19755485
HOXA1 Unknown 17213808
RELA Activation 20495570
STAT3 Unknown 23991099
USF2 Unknown 23991099
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
70
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin ISA
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603349 3374 ENSG00000116016
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q99814
Protein name Endothelial PAS domain-containing protein 1 (EPAS-1) (Basic-helix-loop-helix-PAS protein MOP2) (Class E basic helix-loop-helix protein 73) (bHLHe73) (HIF-1-alpha-like factor) (HLF) (Hypoxia-inducible factor 2-alpha) (HIF-2-alpha) (HIF2-alpha) (Member of P
Protein function Transcription factor involved in the induction of oxygen regulated genes. Heterodimerizes with ARNT; heterodimer binds to core DNA sequence 5'-TACGTG-3' within the hypoxia response element (HRE) of target gene promoters (By similarity). Regulate
PDB 1P97 , 2A24 , 3F1N , 3F1O , 3F1P , 3H7W , 3H82 , 4GHI , 4GS9 , 4PKY , 4XT2 , 5KIZ , 5TBM , 5UFP , 6BVB , 6CZW , 6D09 , 6D0B , 6D0C , 6I7Q , 6I7R , 6X21 , 6X28 , 6X2H , 6X37 , 6X3D , 7Q5V , 7Q5X , 7UJV , 8CK3 , 8CK4 , 8CK8 , 8Q5S , 8Q64 , 8Q6D , 8Q6E , 8RUT , 8RUV , 8RUZ , 8RV1
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00989 PAS 85 183 PAS fold Domain
PF08447 PAS_3 254 341 PAS fold Domain
PF11413 HIF-1 517 549 Hypoxia-inducible factor-1 Family
PF08778 HIF-1a_CTAD 833 869 HIF-1 alpha C terminal transactivation domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in most tissues, with highest levels in placenta, lung and heart. Selectively expressed in endothelial cells.
Sequence
MTADKEKKRSSSERRKEKSRDAARCRRSKETEVFYELAHELPLPHSVSSHLDKASIMRLA
ISFLRTHKLLSSVCSENESEAEADQQMDNLYLKALEGFIAVVTQDGDMIFLSENISKFMG
LTQVELTGHSIFDFTHPCDHEEIRENLSLKNGSGFGKKSKDMSTERDFFMRMKCTVTNRG
RTV
NLKSATWKVLHCTGQVKVYNNCPPHNSLCGYKEPLLSCLIIMCEPIQHPSHMDIPLD
SKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKG
QVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVN
YVLSEIEKNDVVFSMDQTE
SLFKPHLMAMNSIFDSSGKGAVSEKSNFLFTKLKEEPEELAQLAPTPGDAIISLDFGNQN
FEESSAYGKAILPPSQPWATELRSHSTQSEAGSLPAFTVPQAAAPGSTTPSATSSSSSCS
TPNSPEDYYTSLDNDLKIEVIEKLFAMDTEAKDQCSTQTDFNELDLETLAPYIPMDGEDF
QLSPICPEE
RLLAENPQSTPQHCFSAMTNIFQPLAPVAPHSPFLLDKFQQQLESKKTEPE
HRPMSSIFFDAGSKASLPPCCGQASTPLSSMGGRSNTQWPPDPPLHFGPTKWAVGDQRTE
FLGAAPLGPPVSPPHVSTFKTRSAKGFGARGPDVLSPAMVALSNKLKLKRQLEYEEQAFQ
DLSGGDPPGGSTSHLMWKRMKNLRGGSCPLMPDKPLSANVPNDKFTQNPMRGLGHPLRHL
PLPQPPSAISPGENSKSRFPPQCYATQYQDYSLSSAHKVSGMASRLLGPSFESYLLPELT
RYDCEVNVPVLGSSTLLQGGDLLRALDQA
T
Sequence length 870
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  HIF-1 signaling pathway
Pathways in cancer
Renal cell carcinoma
  Regulation of gene expression by Hypoxia-inducible Factor
Cellular response to hypoxia
Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha
Transcriptional regulation of pluripotent stem cells
PTK6 Expression
Neddylation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
33
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Erythrocytosis, familial, 4 Pathogenic; Likely pathogenic rs2103672173, rs137853036, rs137853037, rs2546476675 RCV002273011
RCV000006841
RCV000006842
RCV000006843
RCV003615814
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Asphyxiating thoracic dystrophy 3 Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT SECONDARY POLYCYTHEMIA Disgenet, HPO, Orphanet
Disgenet, HPO, Orphanet
Disgenet, HPO, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOGENESIS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
ABLEPHARON-MACROSTOMIA SYNDROME Ablepharon macrostomia syndrome BEFREE 22595196, 27982053
★☆☆☆☆
Found in Text Mining only
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 26898802
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 26642852
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 12209691, 17437013, 17452775
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 15039136, 18728663, 28653893
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 11751212, 25436804, 29469087, 29859855, 30021192, 30501603, 31516564
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 11605159, 16954163, 23418310, 23533246, 23539726, 23653463, 24466223, 24741025, 24908231, 28116635, 28332883, 28667082, 31035382, 31142060
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 28302031, 29993038
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration BEFREE 31695081
★☆☆☆☆
Found in Text Mining only
Anemia Anemia Pubtator 16826581, 36500549 Associate
★☆☆☆☆
Found in Text Mining only