Gene Gene information from NCBI Gene database.
Entrez ID 202018
Gene name Transmembrane anterior posterior transformation 1
Gene symbol TAPT1
Synonyms (NCBI Gene)
CMVFROCLSBG
Chromosome 4
Chromosome location 4p15.32
Summary This gene encodes a highly conserved protein that localizes to the centrosome and/or ciliary basal body. Mutations in this gene disrupt Golgi morphology and trafficking and normal primary cilium formation and these mutations are congenitally manifested by
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs869312980 T>A Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs869320633 C>G Pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
173
miRTarBase ID miRNA Experiments Reference
MIRT017563 hsa-miR-335-5p Microarray 18185580
MIRT044889 hsa-miR-193a-3p CLASH 23622248
MIRT439485 hsa-miR-155-5p HITS-CLIP 22473208
MIRT439485 hsa-miR-155-5p HITS-CLIP 22473208
MIRT1411326 hsa-miR-1238 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
25
GO ID Ontology Definition Evidence Reference
GO:0001503 Process Ossification IEA
GO:0005654 Component Nucleoplasm IDA
GO:0005737 Component Cytoplasm IEA
GO:0005789 Component Endoplasmic reticulum membrane IBA
GO:0005813 Component Centrosome IDA 26365339
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
612758 26887 ENSG00000169762
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q6NXT6
Protein name Transmembrane anterior posterior transformation protein 1 homolog (Cytomegalovirus partial fusion receptor)
Protein function Plays a role in primary cilia formation (PubMed:26365339). May act as a downstream effector of HOXC8 possibly by transducing or transmitting extracellular information required for axial skeletal patterning during development (By similarity). May
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05346 DUF747 155 459 Eukaryotic membrane protein family Family
Sequence
MAGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRE
RRRGRTELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMVFGIFLCL
DAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVD
YSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIP
HFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLF
QMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFI
TKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSS
IKVQGILSYACVILFYFGLISLKVLNSIVLLGKSCQYVK
EAKMEEKLSNPPATCTPGKPS
SKSQNKCKPSQGLSTEENLSASITKQPIHQKENIIPLLVTSNSDQFLTTPDGDEKDITQD
NSELKHRSSKKDLLEIDRFTICGNRID
Sequence length 567
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
23
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Complex lethal osteochondrodysplasia Likely pathogenic; Pathogenic rs1265664823, rs869320633, rs869312980 RCV001844402
RCV000210518
RCV000210534
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormal long bone morphology Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BONE FRAGILITY WITH CONTRACTURES, ARTERIAL RUPTURE, AND DEAFNESS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CATARACT Disgenet, GWAS catalog
Disgenet, GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Brachycephaly Brachycephaly HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 33374314 Associate
★☆☆☆☆
Found in Text Mining only
Cerebellar Hypoplasia Cerebellar Hypoplasia HPO_DG
★☆☆☆☆
Found in Text Mining only
Ciliopathies Ciliopathies BEFREE 26365339
★☆☆☆☆
Found in Text Mining only
Complex lethal osteochondrodysplasia Lethal Osteochondrodysplasia Orphanet
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital hypoplasia of femur Short femur HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital hypoplasia of lung Pulmonary hypoplasia HPO_DG
★☆☆☆☆
Found in Text Mining only
Defect of skull ossification Defect Of Skull Ossification HPO_DG
★☆☆☆☆
Found in Text Mining only
Hydronephrosis Hydronephrosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Hydrops Fetalis Hydrops Fetalis HPO_DG
★☆☆☆☆
Found in Text Mining only