Gene Gene information from NCBI Gene database.
Entrez ID 1959
Gene name Early growth response 2
Gene symbol EGR2
Synonyms (NCBI Gene)
AT591CMT1DCMT4EKROX20
Chromosome 10
Chromosome location 10q21.3
Summary The protein encoded by this gene is a transcription factor with three tandem C2H2-type zinc fingers. Defects in this gene are associated with Charcot-Marie-Tooth disease type 1D (CMT1D), Charcot-Marie-Tooth disease type 4E (CMT4E), and with Dejerine-Sotta
SNPs SNP information provided by dbSNP.
18
SNP ID Visualize variation Clinical significance Consequence
rs104894158 A>T Pathogenic Missense variant, coding sequence variant
rs104894159 G>A Pathogenic Missense variant, coding sequence variant
rs104894160 C>A,G Pathogenic, uncertain-significance Missense variant, coding sequence variant
rs104894161 G>A Pathogenic, uncertain-significance Missense variant, coding sequence variant
rs121434563 C>T Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
39
miRTarBase ID miRNA Experiments Reference
MIRT003417 hsa-miR-100-5p MicroarrayqRT-PCR 19396866
MIRT003222 hsa-miR-150-5p Luciferase reporter assaysemi-qRT-PCRWestern blot 20067763
MIRT020183 hsa-miR-130b-3p Sequencing 20371350
MIRT022653 hsa-miR-124-3p Microarray 18668037
MIRT028079 hsa-miR-93-5p Sequencing 20371350
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
EWSR1 Unknown 22327514
GLI1 Repression 18924150
SCD5 Unknown 22510410
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
75
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IEA
GO:0000976 Function Transcription cis-regulatory region binding ISS
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA 12687019
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
129010 3239 ENSG00000122877
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P11161
Protein name E3 SUMO-protein ligase EGR2 (EC 2.3.2.-) (AT591) (E3 SUMO-protein transferase ERG2) (Early growth response protein 2) (EGR-2) (Zinc finger protein Krox-20)
Protein function Sequence-specific DNA-binding transcription factor (PubMed:17717711). Plays a role in hindbrain segmentation by regulating the expression of a subset of homeobox containing genes and in Schwann cell myelination by regulating the expression of ge
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF11928 DUF3446 94 184 Early growth response N-terminal domain Domain
PF00096 zf-C2H2 340 364 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 370 392 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 398 420 Zinc finger, C2H2 type Domain
Sequence
MMTAKAVDKIPVTLSGFVHQLSDNIYPVEDLAATSVTIFPNAELGGPFDQMNGVAGDGMI
NIDMTGEKRSLDLPYPSSFAPVSAPRNQTFTYMGKFSIDPQYPGASCYPEGIINIVSAGI
LQGVTSPASTTASSSVTSASPNPLATGPLGVCTMSQTQPDLDHLYSPPPPPPPYSGCAGD
LYQD
PSAFLSAATTSTSSSLAYPPPPSYPSPKPATDPGLFPMIPDYPGFFPSQCQRDLHG
TAGPDRKPFPCPLDTLRVPPPLTPLSTIRNFTLGGPSAGVTGPGASGGSEGPRLPGSSSA
AAAAAAAAAYNPHHLPLRPILRPRKYPNRPSKTPVHERPYPCPAEGCDRRFSRSDELTRH
IRIH
TGHKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDYCGRKFARSDERKRHTKIH
LRQKERKSSAPSASVPAPSTASCSGGVQPGGTLCSSNSSSLGGGPLAPCSSRTRTP
Sequence length 476
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  C-type lectin receptor signaling pathway
Hepatitis B
Human T-cell leukemia virus 1 infection
Viral carcinogenesis
  NGF-stimulated transcription
EGR2 and SOX10-mediated initiation of Schwann cell myelination
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
44
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Charcot-Marie-Tooth disease Pathogenic rs104894161, rs749558026, rs281865136, rs281865137, rs1589080524 RCV000856959
RCV000789746
RCV000789743
RCV000789745
RCV000789748
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Charcot-Marie-Tooth disease type 1D Pathogenic rs104894159, rs104894161, rs749558026, rs281865136, rs281865137, rs1589080524 RCV000018234
RCV000018237
RCV003447138
RCV000033900
RCV000033901
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Charcot-Marie-Tooth disease, type I Pathogenic; Likely pathogenic rs281865137, rs864622273, rs104894159, rs104894161, rs121434563, rs749558026, rs281865136, rs751448371, rs1589080524, rs1842187600 RCV001389257
RCV000206846
RCV001049422
RCV000231023
RCV001233037
View all (6 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Dejerine-Sottas disease Pathogenic rs2132702182, rs2132702519, rs104894161, rs121434563 RCV002051605
RCV002249928
RCV000032120
RCV003447084
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATOPIC ECZEMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISTIC DISORDER CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 37549144 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aortic Valve Insufficiency Aortic Valve Insufficiency BEFREE 25344368, 26711547
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism BEFREE 19000991
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism LHGDN 19000991
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism CTD_human_DG 19000991
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autoimmune Diseases Autoimmune Diseases BEFREE 20194224, 27856665, 27911796, 29728568
★☆☆☆☆
Found in Text Mining only
Behcet Syndrome Behcet disease Pubtator 28166214, 29907633 Associate
★☆☆☆☆
Found in Text Mining only
Bicuspid aortic valve Bicuspid aortic valve BEFREE 29158447
★☆☆☆☆
Found in Text Mining only
Bipolar Disorder Bipolar Disorder BEFREE 22089088, 23747400
★★☆☆☆
Found in Text Mining + Unknown/Other Associations