Gene Gene information from NCBI Gene database.
Entrez ID 1948
Gene name Ephrin B2
Gene symbol EFNB2
Synonyms (NCBI Gene)
EPLG5HTKLHtk-LLERK5ephrin-B2
Chromosome 13
Chromosome location 13q33.3
Summary This gene encodes a member of the ephrin (EPH) family. The ephrins and EPH-related receptors comprise the largest subfamily of receptor protein-tyrosine kinases and have been implicated in mediating developmental events, especially in the nervous system a
miRNA miRNA information provided by mirtarbase database.
349
miRTarBase ID miRNA Experiments Reference
MIRT006337 hsa-miR-20b-5p Luciferase reporter assay 22438230
MIRT006337 hsa-miR-20b-5p Luciferase reporter assay 22438230
MIRT006337 hsa-miR-20b-5p Luciferase reporter assay 22438230
MIRT007101 hsa-miR-204-5p Luciferase reporter assayqRT-PCRWestern blot 23204229
MIRT007101 hsa-miR-204-5p Luciferase reporter assayqRT-PCRWestern blot 23204229
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
59
GO ID Ontology Definition Evidence Reference
GO:0001525 Process Angiogenesis IDA 12734395
GO:0001525 Process Angiogenesis IDA 12734395, 22555806
GO:0001525 Process Angiogenesis IEA
GO:0001525 Process Angiogenesis IMP 28687708, 30578106
GO:0001618 Function Virus receptor activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600527 3227 ENSG00000125266
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P52799
Protein name Ephrin-B2 (EPH-related receptor tyrosine kinase ligand 5) (LERK-5) (HTK ligand) (HTK-L)
Protein function Cell surface transmembrane ligand for Eph receptors, a family of receptor tyrosine kinases which are crucial for migration, repulsion and adhesion during neuronal, vascular and epithelial development. Binds promiscuously Eph receptors residing o
PDB 2HLE , 2I85 , 2VSK , 2VSM , 2WO2 , 3GXU , 4UF7 , 6P7Y , 6PDL
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00812 Ephrin 29 164 Ephrin Domain
Tissue specificity TISSUE SPECIFICITY: Lung and kidney.
Sequence
MAVRRDSVWKYCWGVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDI
ICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPN
LWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKV
GQDASSAGSTRNKDPT
RRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIV
IIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNNGSEPSDIIIPLRTADSVF
CPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
Sequence length 333
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Axon guidance   EPH-Ephrin signaling
EPHB-mediated forward signaling
Ephrin signaling
EPH-ephrin mediated repulsion of cells
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
5
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CONGENITAL ABSENCE OF LUNG Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
EFNB2-related disorder Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LIVER NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LUNG NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 30106131
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma BEFREE 27649287
★☆☆☆☆
Found in Text Mining only
Ambiguous Genitalia Ambiguous Genitalia BEFREE 20105145
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 30662604
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis BEFREE 25779027
★☆☆☆☆
Found in Text Mining only
Asthma Asthma Pubtator 28599074 Associate
★☆☆☆☆
Found in Text Mining only
Astrocytoma Astrocytoma BEFREE 19728339
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis Pubtator 21672356 Associate
★☆☆☆☆
Found in Text Mining only
Bladder Neoplasm Bladder Neoplasm BEFREE 28320388
★☆☆☆☆
Found in Text Mining only
Bone Diseases Bone disease Pubtator 19664212 Associate
★☆☆☆☆
Found in Text Mining only