Gene Gene information from NCBI Gene database.
Entrez ID 1908
Gene name Endothelin 3
Gene symbol EDN3
Synonyms (NCBI Gene)
ET-3ET3HSCR4PPET3WS4B
Chromosome 20
Chromosome location 20q13.32
Summary The protein encoded by this gene is a member of the endothelin family. Endothelins are endothelium-derived vasoactive peptides involved in a variety of biological functions. The active form of this protein is a 21 amino acid peptide processed from the pre
SNPs SNP information provided by dbSNP.
11
SNP ID Visualize variation Clinical significance Consequence
rs11570344 A>-,AA Likely-pathogenic, pathogenic, benign-likely-benign, likely-benign Intron variant, coding sequence variant, non coding transcript variant, frameshift variant
rs11570351 G>A Risk-factor, likely-benign Missense variant, coding sequence variant, 3 prime UTR variant, non coding transcript variant
rs74315384 G>T Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs74315385 C>A,T Pathogenic Stop gained, coding sequence variant, non coding transcript variant, synonymous variant
rs267606778 A>G Pathogenic Coding sequence variant, missense variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
70
miRTarBase ID miRNA Experiments Reference
MIRT495210 hsa-miR-4668-3p PAR-CLIP 23708386
MIRT495208 hsa-miR-4282 PAR-CLIP 23708386
MIRT495209 hsa-miR-605-5p PAR-CLIP 23708386
MIRT495207 hsa-miR-3606-3p PAR-CLIP 23708386
MIRT495206 hsa-miR-513a-3p PAR-CLIP 23708386
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
49
GO ID Ontology Definition Evidence Reference
GO:0001755 Process Neural crest cell migration IEA
GO:0002690 Process Positive regulation of leukocyte chemotaxis IDA 9696419
GO:0003100 Process Regulation of systemic arterial blood pressure by endothelin IBA
GO:0003100 Process Regulation of systemic arterial blood pressure by endothelin IDA 2649896
GO:0005102 Function Signaling receptor binding TAS 8298278
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
131242 3178 ENSG00000124205
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P14138
Protein name Endothelin-3 (ET-3) (Preproendothelin-3) (PPET3)
Protein function Endothelins are endothelium-derived vasoconstrictor peptides.
PDB 6IGK
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00322 Endothelin 93 121 Endothelin family Repeat
Tissue specificity TISSUE SPECIFICITY: Expressed in trophoblasts and placental stem villi vessels, but not in cultured placental smooth muscle cells. {ECO:0000269|PubMed:9284755}.
Sequence
MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
P
EQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
SNSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP
Sequence length 238
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  cAMP signaling pathway
Neuroactive ligand-receptor interaction
Vascular smooth muscle contraction
Renin secretion
  Peptide ligand-binding receptors
G alpha (q) signalling events
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
27
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Sensorineural hearing loss disorder Likely pathogenic rs745795470 RCV001353198
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Waardenburg syndrome type 4B Pathogenic; Likely pathogenic rs1568823517, rs74315384, rs74315385, rs267606778, rs267606779, rs977075341 RCV000018123
RCV000018124
RCV000018129
RCV000018130
RCV000018131
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormal rectum morphology Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aganglionic megacolon Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BILIARY ATRESIA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BRADYCARDIA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Achondroplasia Achondroplasia BEFREE 8961255
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 25861020
★☆☆☆☆
Found in Text Mining only
Aganglionosis, Colonic Colonic Aganglionosis BEFREE 10792313, 19556619
★☆☆☆☆
Found in Text Mining only
Aganglionosis, Colonic Colonic Aganglionosis GENOMICS_ENGLAND_DG 19764030
★☆☆☆☆
Found in Text Mining only
Aganglionosis, Colonic Colonic Aganglionosis CTD_human_DG 8630502, 8630503, 8896568, 9359047
★☆☆☆☆
Found in Text Mining only
Aganglionosis, Rectosigmoid Colon Colonic Aganglionosis CTD_human_DG 8630502, 8630503, 8896568, 9359047
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 28880927
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 28880927
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis Pubtator 28880927 Associate
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 10672062, 19527488
★☆☆☆☆
Found in Text Mining only