Gene Gene information from NCBI Gene database.
Entrez ID 1892
Gene name Enoyl-CoA hydratase, short chain 1
Gene symbol ECHS1
Synonyms (NCBI Gene)
ECHS1DSCEHmECHmECH1
Chromosome 10
Chromosome location 10q26.3
Summary The protein encoded by this gene functions in the second step of the mitochondrial fatty acid beta-oxidation pathway. It catalyzes the hydration of 2-trans-enoyl-coenzyme A (CoA) intermediates to L-3-hydroxyacyl-CoAs. The gene product is a member of the h
SNPs SNP information provided by dbSNP.
26
SNP ID Visualize variation Clinical significance Consequence
rs144800865 T>C Likely-pathogenic Missense variant, non coding transcript variant, coding sequence variant
rs150321966 G>A Likely-pathogenic, pathogenic-likely-pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs151006739 C>T Likely-pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs201865375 T>C Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs201966675 C>A Likely-pathogenic Coding sequence variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
118
miRTarBase ID miRNA Experiments Reference
MIRT023625 hsa-miR-1-3p Proteomics;Microarray 18668037
MIRT046438 hsa-miR-15b-5p CLASH 23622248
MIRT045819 hsa-miR-152-3p CLASH 23622248
MIRT045094 hsa-miR-186-5p CLASH 23622248
MIRT951765 hsa-miR-1270 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
26
GO ID Ontology Definition Evidence Reference
GO:0003824 Function Catalytic activity IEA
GO:0004165 Function Delta(3)-delta(2)-enoyl-CoA isomerase activity IEA
GO:0004300 Function Enoyl-CoA hydratase activity EXP 26251176
GO:0004300 Function Enoyl-CoA hydratase activity IDA 26251176
GO:0004300 Function Enoyl-CoA hydratase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602292 3151 ENSG00000127884
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P30084
Protein name Enoyl-CoA hydratase, mitochondrial (mECH) (mECH1) (EC 4.2.1.17) (EC 5.3.3.8) (Enoyl-CoA hydratase 1) (ECHS1) (Short-chain enoyl-CoA hydratase) (SCEH)
Protein function Converts unsaturated trans-2-enoyl-CoA species ((2E)-enoyl-CoA) to the corresponding (3S)-3hydroxyacyl-CoA species through addition of a water molecule to the double bond (PubMed:25125611, PubMed:26251176). Catalyzes the hydration of medium- and
PDB 2HW5
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00378 ECH_1 42 290 Enoyl-CoA hydratase/isomerase Domain
Tissue specificity TISSUE SPECIFICITY: Liver, fibroblast, muscle. Barely detectable in spleen and kidney.
Sequence
Sequence length 290
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Fatty acid elongation
Fatty acid degradation
Valine, leucine and isoleucine degradation
Lysine degradation
Tryptophan metabolism
beta-Alanine metabolism
Propanoate metabolism
Butanoate metabolism
Metabolic pathways
Carbon metabolism
Fatty acid metabolism
  Branched-chain amino acid catabolism
Beta oxidation of lauroyl-CoA to decanoyl-CoA-CoA
Beta oxidation of decanoyl-CoA to octanoyl-CoA-CoA
Beta oxidation of octanoyl-CoA to hexanoyl-CoA
Beta oxidation of hexanoyl-CoA to butanoyl-CoA
Beta oxidation of butanoyl-CoA to acetyl-CoA
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
16
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
ECHS1-related disorder Likely pathogenic; Pathogenic rs201865375, rs371063211, rs2133443370, rs758723288 RCV004748657
RCV003420583
RCV003412015
RCV003392223
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Leigh syndrome Likely pathogenic; Pathogenic rs587776497, rs587776498, rs746519257 RCV000144496
RCV000144497
RCV004017769
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Mitochondrial short-chain Enoyl-Coa hydratase 1 deficiency Likely pathogenic; Pathogenic rs933592081, rs1164154836, rs587776497, rs587776498, rs2133441975, rs2133443188, rs769429279, rs786204001, rs786204002, rs1849042311, rs201865375, rs864309656, rs2493847739, rs371063211, rs758723288
View all (20 more)
RCV004774460
RCV002246511
RCV000167581
RCV000167582
RCV002249039
View all (30 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Thymoma Likely pathogenic; Pathogenic rs754815893 RCV005913621
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cervical cancer Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Familial cancer of breast Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LEIGH DISEASE CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LEIGH SYNDROME WITH LEUKODYSTROPHY GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acidosis Lactic Lactic acidosis Pubtator 26081110, 32354323 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Basal Ganglia Diseases Basal ganglia disease Pubtator 26081110, 32329585, 33112498, 40652483 Associate
★☆☆☆☆
Found in Text Mining only
Beta-Hydroxyisobutyryl CoA Deacylase Deficiency Beta-Hydroxyisobutyryl CoA Deacylase Deficiency BEFREE 26099313
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Brain Diseases Brain disease Pubtator 32354323, 40652483 Associate
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 20541551, 26297544
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 20541551 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 31891870 Inhibit
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy BEFREE 27221955
★☆☆☆☆
Found in Text Mining only