Gene Gene information from NCBI Gene database.
Entrez ID 1861
Gene name Torsin family 1 member A
Gene symbol TOR1A
Synonyms (NCBI Gene)
AMC5DQ2DYT1
Chromosome 9
Chromosome location 9q34.11
Summary The protein encoded by this gene is a member of the AAA family of adenosine triphosphatases (ATPases), is related to the Clp protease/heat shock family and is expressed prominently in the substantia nigra pars compacta. Mutations in this gene result in th
SNPs SNP information provided by dbSNP.
5
SNP ID Visualize variation Clinical significance Consequence
rs1801968 C>G,T Risk-factor, likely-benign, benign Missense variant, coding sequence variant, non coding transcript variant
rs80358233 CTC>- Pathogenic, pathogenic-likely-pathogenic Coding sequence variant, inframe deletion, non coding transcript variant
rs267607134 A>T Uncertain-significance, pathogenic, conflicting-interpretations-of-pathogenicity Missense variant, non coding transcript variant, coding sequence variant
rs727502811 C>T Conflicting-interpretations-of-pathogenicity Missense variant, non coding transcript variant, coding sequence variant
rs760768475 G>A Likely-pathogenic Coding sequence variant, non coding transcript variant, stop gained
miRNA miRNA information provided by mirtarbase database.
244
miRTarBase ID miRNA Experiments Reference
MIRT051256 hsa-miR-16-5p CLASH 23622248
MIRT722992 hsa-miR-34b-3p HITS-CLIP 19536157
MIRT722991 hsa-miR-4289 HITS-CLIP 19536157
MIRT722990 hsa-miR-3120-5p HITS-CLIP 19536157
MIRT722989 hsa-miR-15b-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
72
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0000338 Process Protein deneddylation IMP 21102408
GO:0005515 Function Protein binding IPI 15147511, 15505207, 15767459, 18167355, 18827015, 21102408, 23569223, 25416956, 25910212, 32296183, 32814053, 33961781
GO:0005524 Function ATP binding IEA
GO:0005634 Component Nucleus IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605204 3098 ENSG00000136827
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O14656
Protein name Torsin-1A (Dystonia 1 protein) (Torsin ATPase-1A) (EC 3.6.4.-) (Torsin family 1 member A)
Protein function Protein with chaperone functions important for the control of protein folding, processing, stability and localization as well as for the reduction of misfolded protein aggregates. Involved in the regulation of synaptic vesicle recycling, control
PDB 5J1S , 5J1T , 6OIF
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06309 Torsin 44 169 Torsin Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed. Highest levels in kidney and liver. In the brain, high levels found in the dopaminergic neurons of the substantia nigra pars compacta, as well as in the neocortex, hippocampus and cerebellum. Also highly expressed in
Sequence
MKLGRAVLGLLLLAPSVVQAVEPISLGLALAGVLTGYIYPRLYCLFAECCGQKRSLSREA
LQKDLDDNLFGQHLAKKIILNAVFGFINNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIY
EGGLNSDYVHLFVATLHFPHASNITLYKDQLQLWIRGNVSACARSIFIF
DEMDKMHAGLI
DAIKPFLDYYDLVDGVSYQKAMFIFLSNAGAERITDVALDFWRSGKQREDIKLKDIEHAL
SVSVFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRVEMQSRGYEIDEDIVSRV
AEEMTFFPKEERVFSDKGCKTVFTKLDYYYDD
Sequence length 332
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Cargo recognition for clathrin-mediated endocytosis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
34
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Arthrogryposis multiplex congenita 5 Likely pathogenic; Pathogenic rs80358233, rs753220814, rs760768475, rs2030965698, rs774552108 RCV002504750
RCV003155900
RCV001250912
RCV001250910
RCV001250911
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Dystonic disorder Likely pathogenic; Pathogenic rs80358233, rs760768475 RCV000584141
RCV005091969
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Early-onset generalized limb-onset dystonia Pathogenic; Likely pathogenic rs2131007486, rs2131001171, rs2131004790, rs80358233, rs760768475 RCV001647331
RCV002246779
RCV002246780
RCV000005488
RCV000677723
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
TOR1A-related disorder Likely pathogenic; Pathogenic rs80358233, rs2490563082 RCV003335014
RCV004550658
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Uncertain significance; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Chronic lymphocytic leukemia/small lymphocytic lymphoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DYSTONIA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adult-Onset Dystonias Dystonia BEFREE 19344776
★☆☆☆☆
Found in Text Mining only
Adult-Onset Dystonias Dystonia CTD_human_DG 23222958
★☆☆☆☆
Found in Text Mining only
Adult-Onset Idiopathic Focal Dystonias Dystonia CTD_human_DG 23222958
★☆☆☆☆
Found in Text Mining only
Adult-Onset Idiopathic Torsion Dystonias Dystonia CTD_human_DG 23222958
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
Arachnoid Cysts Arachnoid cysts Pubtator 36757831 Associate
★☆☆☆☆
Found in Text Mining only
Arthrogryposis Arthrogryposis multiplex congenita BEFREE 29053766, 30244176
★☆☆☆☆
Found in Text Mining only
Arthrogryposis Arthrogryposis Pubtator 36757831 Associate
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis Pubtator 29064046 Associate
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism Pubtator 31808517 Associate
★☆☆☆☆
Found in Text Mining only