Gene Gene information from NCBI Gene database.
Entrez ID 182
Gene name Jagged canonical Notch ligand 1
Gene symbol JAG1
Synonyms (NCBI Gene)
AGSAGS1AHDAWSCD339CMT2HHDCHEHJ1JAGL1
Chromosome 20
Chromosome location 20p12.2
Summary The jagged 1 protein encoded by JAG1 is the human homolog of the Drosophilia jagged protein. Human jagged 1 is the ligand for the receptor notch 1, the latter is involved in signaling processes. Mutations that alter the jagged 1 protein cause Alagille syn
SNPs SNP information provided by dbSNP.
168
SNP ID Visualize variation Clinical significance Consequence
rs1131695 G>A,C,T Pathogenic, likely-benign, benign Coding sequence variant, synonymous variant, stop gained
rs28939668 C>T Likely-pathogenic, pathogenic Missense variant, coding sequence variant
rs121918350 G>A Pathogenic Coding sequence variant, missense variant
rs121918351 C>T Pathogenic Coding sequence variant, missense variant
rs121918352 A>G Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
192
miRTarBase ID miRNA Experiments Reference
MIRT000074 hsa-miR-34a-5p Luciferase reporter assayqRT-PCRWestern blot 20351093
MIRT005457 hsa-miR-200c-3p ImmunohistochemistryqRT-PCR 21224848
MIRT000176 hsa-miR-21-5p FlowImmunoblotLuciferase reporter assayMicroarrayqRT-PCR 19398721
MIRT000074 hsa-miR-34a-5p FlowImmunoblotLuciferase reporter assayMicroarrayqRT-PCR 19398721
MIRT006291 hsa-miR-34b-3p Luciferase reporter assayqRT-PCRWestern blot 22113133
Transcription factors Transcription factors information provided by TRRUST V2 database.
4
Transcription factor Regulation Reference
KDM4C Activation 23698634
PPARG Unknown 20436223
RUNX3 Repression 21637926
SNAI2 Activation 20509143
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
90
GO ID Ontology Definition Evidence Reference
GO:0001525 Process Angiogenesis NAS 8955070
GO:0001709 Process Cell fate determination NAS 9207788
GO:0001953 Process Negative regulation of cell-matrix adhesion IDA 11549580
GO:0001974 Process Blood vessel remodeling IEA
GO:0002011 Process Morphogenesis of an epithelial sheet IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601920 6188 ENSG00000101384
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P78504
Protein name Protein jagged-1 (Jagged1) (hJ1) (CD antigen CD339)
Protein function Ligand for multiple Notch receptors and involved in the mediation of Notch signaling (PubMed:18660822, PubMed:20437614). May be involved in cell-fate decisions during hematopoiesis (PubMed:9462510). Seems to be involved in early and late stages
PDB 2KB9 , 2VJ2 , 4CBZ , 4CC0 , 4CC1 , 4XI7 , 5BO1
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07657 MNNL 32 107 N terminus of Notch ligand Family
PF01414 DSL 167 229 Delta serrate ligand Domain
PF00008 EGF 300 332 EGF-like domain Domain
PF00008 EGF 340 370 EGF-like domain Domain
PF00008 EGF 378 408 EGF-like domain Domain
PF07645 EGF_CA 412 450 Calcium-binding EGF domain Domain
PF00008 EGF 450 483 EGF-like domain Domain
PF00008 EGF 491 521 EGF-like domain Domain
PF00008 EGF 529 559 EGF-like domain Domain
PF00008 EGF 633 663 EGF-like domain Domain
PF00008 EGF 671 701 EGF-like domain Domain
PF00008 EGF 748 777 EGF-like domain Domain
PF00008 EGF 786 816 EGF-like domain Domain
PF12661 hEGF 829 849 Human growth factor-like EGF Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed in adult and fetal tissues. In cervix epithelium expressed in undifferentiated subcolumnar reserve cells and squamous metaplasia. Expression is up-regulated in cervical squamous cell carcinoma. Expressed in bone marrow
Sequence
MRSPRTRGRSGRPLSLLLALLCALRAKVCGASGQFELEILSMQNVNGELQNGNCCGGARN
PGDRKCTRDECDTYFKVCLKEYQSRVTAGGPCSFGSGSTPVIGGNTF
NLKASRGNDRNRI
VLPFSFAWPRSYTLLVEAWDSSNDTVQPDSIIEKASHSGMINPSRQWQTLKQNTGVAHFE
YQIRVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPEC
NRAICRQGCSP
KHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYC
GTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPN
CEIAEHACLSDPCHNRGSCKETSLGFEC
ECSPGWTGPT
CSTNIDDCSPNNCSHGGTCQDLVNGFKCVCPPQWTGKTCQLDANECEAKP
CVNAKSCKNLIASYYCDCLPGWMGQNCDI
NINDCLGQCQNDASCRDLVNGYRCICPPGYA
GDH
CERDIDECASNPCLNGGHCQNEINRFQCLCPTGFSGNLCQLDIDYCEPNPCQNGAQC
YNRASDYFCKCPEDYEGKN
CSHLKDHCRTTPCEVIDSCTVAMASNDTPEGVRYISSNVCG
PHGKCKSQSGGKFTCDCNKGFTGTYCHENINDCESNPCRNGGTCIDGVNSYKCICSDGWE
GAY
CETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCDEATCNNGGTC
YDEGDAFKCMCPGGWEGTTCNIARNSSCLPNPCHNGGTCVVNGESFTCVCKEGWEGPICA
QNTNDCSPHPCYNSGTCVDGDNWYRCECAPGFAGPDCRININECQSSPCAFGATCVDEIN
GYRCVCPPG
HSGAKCQEVSGRPCITMGSVIPDGAKWDDDCNTCQCLNGRIACSKVWCGPR
PCLLHKGHSECPSGQSCIPILDDQCFVHPCTGVGECRSSSLQPVKTKCTSDSYYQDNCAN
ITFTFNKEMMSPGLTTEHICSELRNLNILKNVSAEYSIYIACEPSPSANNEIHVAISAED
IRDDGNPIKEITDKIIDLVSKRDGNSSLIAAVAEVRVQRRPLKNRTDFLVPLLSSVLTVA
WICCLVTAFYWCLRKRRKPGSHTHSASEDNTTNNVREQLNQIKNPIEKHGANTVPIKDYE
NKNSKMSKIRTHNSEVEEDDMDKHQQKARFAKQPAYTLVDREEKPPNGTPTKHPNWTNKQ
DNRDLESAQSLNRMEYIV
Sequence length 1218
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Endocrine resistance
Notch signaling pathway
Apelin signaling pathway
Th1 and Th2 cell differentiation
TNF signaling pathway
Human papillomavirus infection
Pathways in cancer
Chemical carcinogenesis - receptor activation
Breast cancer
  Constitutive Signaling by NOTCH1 PEST Domain Mutants
Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant
Constitutive Signaling by NOTCH1 HD Domain Mutants
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
RUNX3 regulates NOTCH signaling
NOTCH3 Activation and Transmission of Signal to the Nucleus
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
53
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Alagille syndrome due to a JAG1 point mutation Pathogenic; Likely pathogenic rs2067293664, rs2067268275, rs2122608799, rs2122597276, rs1555827782, rs2122607604, rs2122593684, rs2122595262, rs2122595945, rs2122597170, rs2122602312, rs2122606192, rs2122606277, rs2122610459, rs764485729
View all (231 more)
RCV001329703
RCV005256773
RCV001375478
RCV001376239
RCV001376921
View all (248 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Arteriohepatic dysplasia Likely pathogenic; Pathogenic rs1294950721, rs2122644925, rs2514538137, rs2514537903, rs727504412, rs2514526436, rs2514531153, rs863223650, rs121918351, rs121918352, rs886039539, rs2514538986, rs2514537675, rs1555827650, rs1568791694 RCV005414339
RCV005002170
RCV005002175
RCV005002176
RCV000844632
View all (10 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Atypical coarctation of aorta Pathogenic; Likely pathogenic rs1555827789, rs863223648, rs1600181733, rs1600184363 RCV000845198
RCV000845195
RCV000845197
RCV000845196
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cardiovascular phenotype Pathogenic; Likely pathogenic rs2514507762, rs2514517294, rs746259131, rs780475862, rs1555828721, rs1555829065, rs1600185499, rs2067324506 RCV002322653
RCV002391897
RCV002395082
RCV002423726
RCV002383649
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALAGILLE SYNDROME 1 HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aortic dilatation Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDER CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute monocytic leukemia Monocytic Leukemia BEFREE 15694671
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 20157766, 23455394
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 21447180, 24086717, 27174628, 27345403, 28788071, 29559312, 29921897
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of colon Adenocarcinoma Of Colon BEFREE 21145176, 28165396, 28788071, 29457735
★☆☆☆☆
Found in Text Mining only
Adenoid Cystic Carcinoma Adenocarcinoma CTD_human_DG 16762588
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 25979380, 30065304
★☆☆☆☆
Found in Text Mining only
Adrenocortical carcinoma Adrenocortical carcinoma BEFREE 22427350, 26548814
★☆☆☆☆
Found in Text Mining only
Adrenocortical Carcinoma Adrenocortical carcinoma Pubtator 22427350 Associate
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 24708907
★☆☆☆☆
Found in Text Mining only
Adult T-Cell Lymphoma/Leukemia T-Cell Lymphoma/Leukemia BEFREE 30231940
★☆☆☆☆
Found in Text Mining only