Gene Gene information from NCBI Gene database.
Entrez ID 175
Gene name Aspartylglucosaminidase
Gene symbol AGA
Synonyms (NCBI Gene)
AGUASRGGA
Chromosome 4
Chromosome location 4q34.3
Summary This gene encodes a member of the N-terminal nucleophile (Ntn) hydrolase family of proteins. The encoded preproprotein is proteolytically processed to generate alpha and beta chains that comprise the mature enzyme. This enzyme is involved in the catabolis
SNPs SNP information provided by dbSNP.
40
SNP ID Visualize variation Clinical significance Consequence
rs121964904 C>G Pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs121964905 C>T Pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs121964906 A>G Pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs121964908 G>A Likely-pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs121964909 A>G Pathogenic Missense variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
50
miRTarBase ID miRNA Experiments Reference
MIRT021212 hsa-miR-150-5p Microarray 20218812
MIRT771553 hsa-miR-106a CLIP-seq
MIRT771554 hsa-miR-106b CLIP-seq
MIRT771555 hsa-miR-17 CLIP-seq
MIRT771556 hsa-miR-20a CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
18
GO ID Ontology Definition Evidence Reference
GO:0003948 Function N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity IBA
GO:0003948 Function N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity IDA 1281977
GO:0003948 Function N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity IEA
GO:0003948 Function N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity IMP 1904874
GO:0005515 Function Protein binding IPI 32296183, 32814053
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613228 318 ENSG00000038002
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P20933
Protein name N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase (EC 3.5.1.26) (Aspartylglucosaminidase) (Glycosylasparaginase) (N4-(N-acetyl-beta-glucosaminyl)-L-asparagine amidase) [Cleaved into: Glycosylasparaginase alpha chain; Glycosylasparaginase beta chain]
Protein function Cleaves the GlcNAc-Asn bond which joins oligosaccharides to the peptide of asparagine-linked glycoproteins.
PDB 1APY , 1APZ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01112 Asparaginase_2 31 336 Asparaginase Domain
Sequence
Sequence length 346
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Other glycan degradation
Lysosome
  Neutrophil degranulation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
19
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Aspartylglucosaminuria Pathogenic; Likely pathogenic rs2111013273, rs370078048, rs991950983, rs2111022003, rs1560950756, rs2111021475, rs2111015936, rs2111013260, rs2111015862, rs2111021738, rs121964904, rs121964905, rs121964906, rs121964907, rs121964908
View all (71 more)
RCV001389042
RCV001382137
RCV001384971
RCV001383515
RCV001829272
View all (93 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Aspartylglucosaminuria, finnish type Pathogenic rs121964904 RCV000000243
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autism Likely pathogenic; Pathogenic rs121964908 RCV004698463
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Sarcoma Likely pathogenic rs1553993921 RCV005901461
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AGA-related disorder Likely benign; Conflicting classifications of pathogenicity; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISTIC DISORDER Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colon adenocarcinoma Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acne Acne HPO_DG
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia BEFREE 22032556, 23701444, 29334164, 30155952
★☆☆☆☆
Found in Text Mining only
Alopecia, Male Pattern Alopecia, Male Pattern BEFREE 19373488, 21073542, 22032556, 23701444
★☆☆☆☆
Found in Text Mining only
Androgenetic Alopecia Androgenetic Alopecia BEFREE 16158823, 17519506, 19820361, 21073542
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis HPO_DG
★☆☆☆☆
Found in Text Mining only
Aspartylglucosamidase (AGA) deficiency Aspartylglucosaminuria ORPHANET_DG 11309371
★☆☆☆☆
Found in Text Mining only
Aspartylglucosaminuria Aspartylglucosaminuria Orphanet
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Attention Deficit Disorder Attention Deficit Hyperactivity Disorder BEFREE 29583035
★☆☆☆☆
Found in Text Mining only
Attention deficit hyperactivity disorder Attention Deficit Hyperactivity Disorder BEFREE 29583035
★☆☆☆☆
Found in Text Mining only
Brachycephaly Brachycephaly HPO_DG
★☆☆☆☆
Found in Text Mining only