Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	165530
Gene name	C-type lectin domain family 4 member F
Gene symbol	CLEC4F
Synonyms (NCBI Gene)	CLECSF13KCLRKCR
Chromosome	2
Chromosome location	2p13.3

Show/Hide all (16)

miRTarBase ID	miRNA	Experiments
MIRT896105	hsa-miR-1343	CLIP-seq
MIRT896106	hsa-miR-3667-3p	CLIP-seq
MIRT896107	hsa-miR-3907	CLIP-seq
MIRT896108	hsa-miR-4474-3p	CLIP-seq
MIRT896109	hsa-miR-548q	CLIP-seq
MIRT1965668	hsa-miR-1236	CLIP-seq
MIRT1965669	hsa-miR-1253	CLIP-seq
MIRT1965670	hsa-miR-204	CLIP-seq
MIRT1965671	hsa-miR-211	CLIP-seq
MIRT1965672	hsa-miR-2964a-5p	CLIP-seq
MIRT1965673	hsa-miR-4252	CLIP-seq
MIRT1965674	hsa-miR-4755-5p	CLIP-seq
MIRT1965675	hsa-miR-4780	CLIP-seq
MIRT1965676	hsa-miR-4786-3p	CLIP-seq
MIRT1965677	hsa-miR-580	CLIP-seq
MIRT1965678	hsa-miR-623	CLIP-seq

Show/Hide all (7)

GO ID	Ontology	Definition	Evidence
GO:0006897	Process	Endocytosis	IEA
GO:0006955	Process	Immune response	IBA
GO:0009897	Component	External side of plasma membrane	IBA
GO:0016020	Component	Membrane	IEA
GO:0030246	Function	Carbohydrate binding	IBA
GO:0030246	Function	Carbohydrate binding	IEA
GO:0038187	Function	Pattern recognition receptor activity	IBA

MIM	HGNC	e!Ensembl
620105	25357	ENSG00000152672

Q8N1N0

Protein name

C-type lectin domain family 4 member F (C-type lectin superfamily member 13) (C-type lectin 13)

Protein function

Receptor with an affinity for galactose and fucose. Could be involved in endocytosis (By similarity).

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00059	Lectin_C	486 → 565	Lectin C-type domain	Domain

Sequence

MDGEAVRFCTDNQCVSLHPQEVDSVAMAPAAPKIPRLVQATPAFMAVTLVFSLVTLFVVV
QQQTRPVPKPVQAVILGDNITGHLPFEPNNHHHFGREAEMRELIQTFKGHMENSSAWVVE
IQMLKCRVDNVNSQLQVLGDHLGNTNADIQMVKGVLKDATTLSLQTQMLRSSLEGTNAEI
QRLKEDLEKADALTFQTLNFLKSSLENTSIELHVLSRGLENANSEIQMLNASLETANTQA
QLANSSLKNANAEIYVLRGHLDSVNDLRTQNQVLRNSLEGANAEIQGLKENLQNTNALNS
QTQAFIKSSFDNTSAEIQFLRGHLERAGDEIHVLKRDLKMVTAQTQKANGRLDQTDTQIQ
VFKSEMENVNTLNAQIQVLNGHMKNASREIQTLKQGMKNASALTSQTQMLDSNLQKASAE
IQRLRGDLENTKALTMEIQQEQSRLKTLHVVITSQEQLQRTQSQLLQMVLQGWKFNGGSL
YYFSSVKKSWHEAEQFCVSQGAHLASVASKEEQAFLVEFTSKVYYWIGLTDRGTEGSWRW
TDGTPFNAAQNKAPGSKGSCPLRKYIIVNSGMGACSFIDTPPCPWILSN

Sequence length

589

Interactions

View interactions

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (2)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
LIVER CIRRHOSIS, EXPERIMENTAL	—	CTD	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
SEASONAL ALLERGIC RHINITIS	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Show/Hide Text Mining Associations (1)

Disease Name	Disease (Merged)	Source	PMID	Relationship Type	Evidence Score
Associations from Text Mining Disease associations identified through text mining
Intervertebral Disc Degeneration	Intervertebral disc disease	Pubtator	35069789	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only

CLEC4F (C-type lectin domain family 4 member F)