Gene Gene information from NCBI Gene database.
Entrez ID 164656
Gene name Transmembrane serine protease 6
Gene symbol TMPRSS6
Synonyms (NCBI Gene)
IRIDAMT2
Chromosome 22
Chromosome location 22q12.3
Summary The protein encoded by this gene is a type II transmembrane serine proteinase that is found attached to the cell surface. The encoded protein may be involved in matrix remodeling processes in the liver. Alternative splicing results in multiple transcript
SNPs SNP information provided by dbSNP.
15
SNP ID Visualize variation Clinical significance Consequence
rs137853119 C>T Pathogenic Coding sequence variant, missense variant
rs137853120 C>T Pathogenic Coding sequence variant, missense variant
rs137853121 G>T Pathogenic Coding sequence variant, stop gained
rs137853122 A>C Pathogenic Coding sequence variant, stop gained
rs137853123 G>A Pathogenic-likely-pathogenic Coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
70
miRTarBase ID miRNA Experiments Reference
MIRT030016 hsa-miR-26b-5p Microarray 19088304
MIRT721887 hsa-miR-6798-5p HITS-CLIP 19536157
MIRT721886 hsa-miR-6742-3p HITS-CLIP 19536157
MIRT721885 hsa-miR-1266-5p HITS-CLIP 19536157
MIRT721884 hsa-miR-4518 HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
31
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0004222 Function Metalloendopeptidase activity TAS
GO:0004252 Function Serine-type endopeptidase activity IEA
GO:0005515 Function Protein binding IPI 18976966, 19357398, 32814053
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
609862 16517 ENSG00000187045
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8IU80
Protein name Transmembrane protease serine 6 (EC 3.4.21.-) (Matriptase-2)
Protein function Membrane-bound serine protease (PubMed:18976966, PubMed:20518742, PubMed:25156943, PubMed:25588876). Through the cleavage of cell surface hemojuvelin (HJV), a regulator of the expression of the iron absorption-regulating hormone hepicidin/HAMP,
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01390 SEA 86 192 SEA domain Family
PF00057 Ldl_recept_a 490 525 Low-density lipoprotein receptor domain class A Repeat
PF00057 Ldl_recept_a 529 566 Low-density lipoprotein receptor domain class A Repeat
PF00089 Trypsin 577 806 Trypsin Domain
Sequence
MLLLFHSKRMPVAEAPQVAGGQGDGGDGEEAEPEGMFKACEDSKRKARGYLRLVPLFVLL
ALLVLASAGVLLWYFLGYKAEVMVSQVYSGSLRVLNRHFSQDLTRRESSAFRSETAKAQK
MLKELITSTRLGTYYNSSSVYSFGEGPLTCFFWFILQIPEHRRLMLSPEVVQALLVEELL
STVNSSAAVPYR
AEYEVDPEGLVILEASVKDIAALNSTLGCYRYSYVGQGQVLRLKGPDH
LASSCLWHLQGPKDLMLKLRLEWTLAECRDRLAMYDVAGPLEKRLITSVYGCSRQEPVVE
VLASGAIMAVVWKKGLHSYYDPFVLSVQPVVFQACEVNLTLDNRLDSQGVLSTPYFPSYY
SPQTHCSWHLTVPSLDYGLALWFDAYALRRQKYDLPCTQGQWTIQNRRLCGLRILQPYAE
RIPVVATAGITINFTSQISLTGPGVRVHYGLYNQSDPCPGEFLCSVNGLCVPACDGVKDC
PNGLDERNCVCRATFQCKEDSTCISLPKVCDGQPDCLNGSDEEQCQEGVPCGTFTFQCED
RSCVKKPNPQCDGRPDCRDGSDEEHC
DCGLQGPSSRIVGGAVSSEGEWPWQASLQVRGRH
ICGGALIADRWVITAAHCFQEDSMASTVLWTVFLGKVWQNSRWPGEVSFKVSRLLLHPYH
EEDSHDYDVALLQLDHPVVRSAAVRPVCLPARSHFFEPGLHCWITGWGALREGGPISNAL
QKVDVQLIPQDLCSEVYRYQVTPRMLCAGYRKGKKDACQGDSGGPLVCKALSGRWFLAGL
VSWGLGCGRPNYFGVYTRITGVISWI
QQVVT
Sequence length 811
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Collagen degradation
Degradation of the extracellular matrix
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
11
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of metabolism/homeostasis Likely pathogenic rs2146038092 RCV001814410
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Iron-refractory iron deficiency anemia Likely pathogenic; Pathogenic rs2146057214, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966, rs137853122, rs137853123, rs786205060, rs267607121, rs776912815, rs918426003
View all (1 more)
RCV001730052
RCV000001464
RCV000001465
RCV000001466
RCV000001467
View all (11 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Microcytic anemia Likely pathogenic; Pathogenic rs137853120, rs137853123, rs1569024289, rs775869554, rs1927509977, rs1930010425 RCV000001469
RCV000001473
RCV000754711
RCV000770971
RCV001250722
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
TMPRSS6-related disorder Likely pathogenic rs137853120, rs137853121, rs2517768538 RCV004755696
RCV003952335
RCV003403018
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANEMIA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, IRON-DEFICIENCY CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hepatocellular carcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
IRON METABOLISM DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
3 beta-Hydroxysteroid dehydrogenase deficiency 3 beta-hydroxysteroid dehydrogenase deficiency BEFREE 12050213
★☆☆☆☆
Found in Text Mining only
AMYOTROPHIC LATERAL SCLEROSIS 1 Lateral Sclerosis BEFREE 11298796
★☆☆☆☆
Found in Text Mining only
Androgen-Insensitivity Syndrome Androgen-Insensitivity Syndrome BEFREE 21480980, 25257530, 27314307
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 19377077, 21622652, 22323359, 22509377, 23433094, 24319154, 24904115, 25557470, 29498084
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Anemia Anemia Pubtator 23433094, 25557470, 30984307, 34444942 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Anemia Hemolytic Hemolytic anemia Pubtator 22509377, 24175968 Associate
★☆☆☆☆
Found in Text Mining only
Anemia hypochromic microcytic Hypochromic microcytic anemia Pubtator 18596229 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Iron Deficiency Iron deficiency anemia Pubtator 18408718, 18596229, 18603562, 19357398, 19818657, 20713458, 20966077, 21873547, 22581667, 23319530, 24782651, 24867957, 25557470, 25588876, 28447549
View all (6 more)
Associate
★☆☆☆☆
Found in Text Mining only
beta Thalassemia Beta thalassemia Pubtator 23144979 Associate
★☆☆☆☆
Found in Text Mining only
Beta thalassemia intermedia beta Thalassemia BEFREE 25425686, 29498084
★☆☆☆☆
Found in Text Mining only