Gene Gene information from NCBI Gene database.
Entrez ID 1591
Gene name Cytochrome P450 family 24 subfamily A member 1
Gene symbol CYP24A1
Synonyms (NCBI Gene)
CP24CYP24HCAIHCINF1P450-CC24
Chromosome 20
Chromosome location 20q13.2
Summary This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This mitochondrial
SNPs SNP information provided by dbSNP.
13
SNP ID Visualize variation Clinical significance Consequence
rs6068812 A>G Likely-pathogenic, pathogenic Missense variant, coding sequence variant
rs35051736 C>G,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs35873579 G>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, missense variant, synonymous variant
rs114368325 G>A,C Pathogenic Coding sequence variant, missense variant
rs139763321 A>G Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
192
miRTarBase ID miRNA Experiments Reference
MIRT004408 hsa-miR-125b-5p qRT-PCRLuciferase reporter assayWestern blotNorthern blot 19570947
MIRT004408 hsa-miR-125b-5p Review 20026422
MIRT004408 hsa-miR-125b-5p Reporter assay 19570947
MIRT024646 hsa-miR-215-5p Microarray 19074876
MIRT026473 hsa-miR-192-5p Microarray 19074876
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
VDR Activation 23463632
VDR Repression 9687155
VDR Unknown 19244278;19429444;21763285
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0001649 Process Osteoblast differentiation IEP 17023519
GO:0004497 Function Monooxygenase activity IEA
GO:0005506 Function Iron ion binding IEA
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005739 Component Mitochondrion IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
126065 2602 ENSG00000019186
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q07973
Protein name 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial (24-OHase) (Vitamin D(3) 24-hydroxylase) (EC 1.14.15.16) (Cytochrome P450 24A1) (Cytochrome P450-CC24)
Protein function A cytochrome P450 monooxygenase with a key role in vitamin D catabolism and calcium homeostasis. Via C24- and C23-oxidation pathways, catalyzes the inactivation of both the vitamin D precursor calcidiol (25-hydroxyvitamin D(3)) and the active ho
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00067 p450 58 512 Cytochrome P450 Domain
Sequence
Sequence length 514
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Steroid biosynthesis
Metabolic pathways
Parathyroid hormone synthesis, secretion and action
MicroRNAs in cancer
  Vitamin D (calciferol) metabolism
Vitamins
Defective CYP24A1 causes Hypercalcemia, infantile (HCAI)
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
32
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
CYP24A1-related disorder Likely pathogenic; Pathogenic rs777011420, rs2516345389, rs6068812, rs139763321 RCV004756331
RCV003393239
RCV003894819
RCV004756031
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hypercalcemia, infantile, 1 Pathogenic; Likely pathogenic rs770055617, rs988715134, rs2146489987, rs777011420, rs2516403268, rs1299109745, rs777947329, rs774967736, rs762334108, rs751526033, rs2516404261, rs2092633467, rs2516376283, rs2516405173, rs876657376
View all (11 more)
RCV005419288
RCV001780349
RCV001780908
RCV003992590
RCV002510418
View all (21 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Muscle spasm Likely pathogenic; Pathogenic rs114368325 RCV000414890
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Renal tubulopathies Likely pathogenic; Pathogenic rs1170841548 RCV006250227
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ATOPIC ECZEMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATTENTION DEFICIT HYPERACTIVITY DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDER CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Actinic keratosis Actinic keratosis BEFREE 29165303
★☆☆☆☆
Found in Text Mining only
Acute pancreatitis Pancreatitis BEFREE 27105398
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 16081282, 19901270
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 21169243, 23026510, 24736069, 27793774
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 26241700
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma BEFREE 19901270, 26241700
★☆☆☆☆
Found in Text Mining only
Adult Rickets Rickets BEFREE 21115105
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration BEFREE 22155603
★☆☆☆☆
Found in Text Mining only
Alport Syndrome Alport Syndrome BEFREE 22739976
★☆☆☆☆
Found in Text Mining only
Anaplastic thyroid carcinoma Anaplastic thyroid cancer BEFREE 22511602
★☆☆☆☆
Found in Text Mining only