Gene Gene information from NCBI Gene database.
Entrez ID 158326
Gene name FRAS1 related extracellular matrix 1
Gene symbol FREM1
Synonyms (NCBI Gene)
BNARC9orf143C9orf145C9orf154MOTATILRRTRIGNO2
Chromosome 9
Chromosome location 9p22.3
Summary This gene encodes a basement membrane protein that may play a role in craniofacial and renal development. Mutations in this gene have been associated with bifid nose with or without anorectal and renal anomalies. Alternatively spliced transcript variants
SNPs SNP information provided by dbSNP.
11
SNP ID Visualize variation Clinical significance Consequence
rs61745612 C>G Likely-benign, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, non coding transcript variant, missense variant, coding sequence variant
rs121912609 G>A Pathogenic, not-provided Genic downstream transcript variant, non coding transcript variant, genic upstream transcript variant, coding sequence variant, missense variant
rs121912610 C>T Pathogenic, not-provided Genic downstream transcript variant, non coding transcript variant, downstream transcript variant, genic upstream transcript variant, 5 prime UTR variant, intron variant, coding sequence variant, missense variant
rs184394424 C>G,T Benign, uncertain-significance, likely-benign, pathogenic Coding sequence variant, non coding transcript variant, genic upstream transcript variant, genic downstream transcript variant, missense variant
rs281875280 T>A,C Pathogenic, not-provided Missense variant, coding sequence variant, genic downstream transcript variant, intron variant, downstream transcript variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
87
miRTarBase ID miRNA Experiments Reference
MIRT017119 hsa-miR-335-5p Microarray 18185580
MIRT644905 hsa-miR-186-3p HITS-CLIP 23824327
MIRT644904 hsa-miR-138-1-3p HITS-CLIP 23824327
MIRT644903 hsa-miR-5571-3p HITS-CLIP 23824327
MIRT644902 hsa-miR-7975 HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
11
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 29688405
GO:0005576 Component Extracellular region IEA
GO:0005604 Component Basement membrane IEA
GO:0007154 Process Cell communication IEA
GO:0007155 Process Cell adhesion IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608944 23399 ENSG00000164946
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q5H8C1
Protein name FRAS1-related extracellular matrix protein 1 (Protein QBRICK)
Protein function Extracellular matrix protein that plays a role in epidermal differentiation and is required for epidermal adhesion during embryonic development.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16184 Cadherin_3 292 391 Domain
PF16184 Cadherin_3 396 502 Domain
PF16184 Cadherin_3 504 617 Domain
PF16184 Cadherin_3 623 756 Domain
PF16184 Cadherin_3 760 869 Domain
PF16184 Cadherin_3 871 984 Domain
PF16184 Cadherin_3 1009 1128 Domain
PF16184 Cadherin_3 1131 1256 Domain
PF16184 Cadherin_3 1258 1374 Domain
PF16184 Cadherin_3 1377 1487 Domain
PF16184 Cadherin_3 1489 1598 Domain
PF16184 Cadherin_3 1611 1726 Domain
PF03160 Calx-beta 1731 1830 Calx-beta domain Domain
PF00059 Lectin_C 2071 2177 Lectin C-type domain Domain
Sequence
MNSLSWGAANAVLLLLLLAWASPTFISINRGVRVMKGHSAFLSGDDLKFAIPKEKDACKV
EVVMNEPITQRVGKLTPQVFDCHFLPNEVKYVHNGCPILDEDTVKLRLYRFTERDTFIET
FILWVYLLEPDCNIIHMSNNVLEVPEFNGLSQAIDKNLLRFDYDRMASLECTVSLDTART
RLPAHGQMVLGEPRPEEPRGDQPHSFFPESQLRAKLKCPGGSCTPGLKKIGSLKVSCEEF
LLMGLRYQHLDPPSPNIDYISIQLDLTDTRSKIVYKSESAWLPVYIRAGIPNQIPKAAFM
AVFILEVDQFILTSLTTSVLDCEEDETPKPLLVFNITKAPLQGYVTHLLDHTRPISSFTW
KDLSDMQIAYQPPNSSHSERRHDEVELEVYD
FFFERSAPMTVHISIRTADTNAPRVSWNT
GLSLLEGQSRAITWEQFQVVDNDDIGAVRLVTVGGLQHGWLTLRGGKGFLFTVADLQAGV
VRYHHDDSDSTKDFVVFRIFDG
HHSIRHKFPINVLPKDDSPPFLITNVVIELEEGQTILI
QGSMLRASDVDASDDYIFFNITKPPQAGEIMKKPGPGLIGYPVHGFLQRDLFNGIIYYRH
FGGEIFEDSFQFVLWDS
HEPPNLSVPQVATIHITPVDDQLPKEAPGVSRHLVVKETEVAY
ITKKQLHFIDSESYDRELVYTITTPPFFSFSHRHLDAGKLFMVDSIPKVVKNPTALELRS
FTQHAVNYMKVAYMPPMQDIGPHCRDVQFTFSVSNQ
HGGTLHGICFNITILPVDNQVPEA
FTNPLKVTEGGQSIISTEHILISDADTKLDNIDLSLRELPLHGRVELNGFPLNSGGTFSW
GDLHTLKVRYQHDGTEVLQDDLLLEVTDG
TNSAEFVLHVEVFPVNDEPPVLKADLMPVMN
CSEGGEVVITSEYIFATDVDSDNLKLMFVIAREPQHGVVRRAGVTVDQFSQRDVISEAVT
YKHTGGEIGLMPCFDTITLVVSDG
EAGPFVNGCCYNGPNPSVPLHASFPVYDLNITVYPV
DNQPPSIAIGPVFVVDEGCSTALTVNHLSATDPDTAADDLEFVLVSPPQFGYLENILPSV
GFEKSNIGISIDSFQWKDMNAFHINYVQSRHLRIEPTADQFTVYVTDG
KHHSLEIPFSII
INPTNDEAPDFVVQNITVCEGQMKELDSSIISAVDLDIPQDALLFSITQKPRHGLLIDRG
FSKDFSENKQPANPHQKHAPVHSFSMELLKTGMRLTYMHDDSESLADDFTIQLSDG
KHKI
LKTISVEVIPVNDEKPMLSKKAEIAMNMGETRIISSAILSAIDEDSPREKIYYVFERLPQ
NGQLQLKIGRDWVPLSPGMKCTQEEVDLNLLRYTHTGAMDSQNQDSFTFYLWDG
NNRSPA
LDCQITIKDMEKGDIVILTKPLVVSKGDRGFLTTTTLLAVDGTDKPEELLYVITSPPRYG
QIEYVHYPGVPITNFSQMDVVGQTVCYVHKSKVTVSSDRFRFIISNG
LRTEHGVFEITLE
TVDRALPVVTRNKGLRLAQGAVGLLSPDLLQLTDPDTPAENLTFLLVQLPQHGQLYLWGT
GLLQHNFTQQDVDSKNVAYRHSGGDSQTDCFTFMATDG
TNQGFIVNGRVWEEPVLFTIQV
DQLDKTAPRITLLHSPSQVGLLKNGCYGIYITSRVLKASDPDTEDDQIIFKILQGPKHGH
LENTTTGEFIHEKFSQKDLNSKTILYIINPSLEVNSDTVEFQIMDP
TGNSATPQILELKW
SHIEWSQTEYEVCENVGLLPLEIIRRGYSMDSAFVGIKVNQVSAAVGKDFTVIPSKLIQF
DPGMSTKMWNIAITYDGLEEDDEVFEVILN
SPVNAVLGTKTKAAVKILDSKGGQCHPSYS
SNQSKHSTWEKGIWHLLPPGSSSSTTSGSFHLERRPLPSSMQLAVIRGDTLRGFDSTDLS
QRKLRTRGNGKTVRPSSVYRNGTDIIYNYHGIVSLKLEDDSFPTHKRKAKVSIISQPQKT
IKVAELPQADKVESTTDSHFPRQDQLPSFPKNCTLELKGLFHFEEGIQKLYQCNGIAWKA
WSPQTKDVEDKSCPAGWHQHSGYCHILITEQKGTWNAAAQACREQYLGNLVTVFSRQHMR
WLWDIGGRKSFWIGLNDQVHAGHWEWIGGEPVAFTNGRRGPSQRSKLGKSCVLVQRQGKW
QTKDCRRAKPHNYVCSR
KL
Sequence length 2179
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  ECM-receptor interaction  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
42
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
BNAR syndrome Likely pathogenic; Pathogenic rs990411562, rs1588131370, rs200778244, rs2538704291, rs1464587064, rs2539492420, rs1380643285, rs2537702433, rs769407804, rs1064797351 RCV001836680
RCV000002065
RCV005045326
RCV003389093
RCV003389094
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
FREM1-related disorder Likely pathogenic rs2539492420 RCV003393201
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Oculotrichoanal syndrome Pathogenic; Likely pathogenic rs1588131370, rs200778244, rs2539492420, rs1380643285, rs2537536904, rs769407804, rs281875281, rs1064797351, rs773469926, rs281875282 RCV004760316
RCV005045326
RCV005863865
RCV005047795
RCV004527545
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Trigonocephaly 2 Likely pathogenic; Pathogenic rs200778244, rs1380643285, rs769407804, rs1064797351 RCV005045326
RCV005047795
RCV002482903
RCV005044734
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Conflicting classifications of pathogenicity; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BIFID NOSE CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BIFID NOSE WITH OR WITHOUT ANORECTAL AND RENAL ANOMALIES CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CAKUT Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acrocephaly Acrocephaly CTD_human_DG
★☆☆☆☆
Found in Text Mining only
Anophthalmos Syndromic microphthalmia HPO_DG
★☆☆☆☆
Found in Text Mining only
Bifid nose Bifid nose Pubtator 38097983 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bifid Nose With Or Without Anorectal And Renal Anomalies Bifid Nose With Or Without Anorectal And Renal Anomalies GENOMICS_ENGLAND_DG 11332973, 24700879
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bifid Nose With Or Without Anorectal And Renal Anomalies Bifid Nose With Or Without Anorectal And Renal Anomalies UNIPROT_DG 19732862
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bifid Nose With Or Without Anorectal And Renal Anomalies Bifid Nose With Or Without Anorectal And Renal Anomalies ORPHANET_DG 19732862, 23401257
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bifid Nose With Or Without Anorectal And Renal Anomalies Bifid Nose With Or Without Anorectal And Renal Anomalies BEFREE 23221805, 23401257
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bifid Nose With Or Without Anorectal And Renal Anomalies Bifid Nose With Or Without Anorectal And Renal Anomalies CTD_human_DG 23221805
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bifid Nose With Or Without Anorectal And Renal Anomalies Bifid nose Pubtator 23401257 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bifid Nose With Or Without Anorectal And Renal Anomalies Bifid Nose With Or Without Anorectal And Renal Anomalies CLINVAR_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations