Gene Gene information from NCBI Gene database.
Entrez ID 157570
Gene name Establishment of sister chromatid cohesion N-acetyltransferase 2
Gene symbol ESCO2
Synonyms (NCBI Gene)
2410004I17RikEFO2EFO2pJHSRBShEFO2
Chromosome 8
Chromosome location 8p21.1
Summary This gene encodes a protein that may have acetyltransferase activity and may be required for the establishment of sister chromatid cohesion during the S phase of mitosis. Mutations in this gene have been associated with Roberts syndrome. [provided by RefS
SNPs SNP information provided by dbSNP.
33
SNP ID Visualize variation Clinical significance Consequence
rs80359844 AT>- Pathogenic Coding sequence variant, non coding transcript variant, frameshift variant
rs80359845 GAGA>- Pathogenic Coding sequence variant, non coding transcript variant, frameshift variant
rs80359846 AAAGA>- Pathogenic Coding sequence variant, non coding transcript variant, frameshift variant
rs80359847 AA>-,AAA Pathogenic Coding sequence variant, non coding transcript variant, frameshift variant
rs80359848 ->A Pathogenic Coding sequence variant, non coding transcript variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
274
miRTarBase ID miRNA Experiments Reference
MIRT022088 hsa-miR-128-3p Sequencing 20371350
MIRT026818 hsa-miR-192-5p Microarray 19074876
MIRT523878 hsa-miR-6894-5p PAR-CLIP 20371350
MIRT523879 hsa-miR-7106-5p PAR-CLIP 20371350
MIRT523877 hsa-miR-149-3p PAR-CLIP 20371350
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
ZNF143 Unknown 20116366
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
32
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin IBA
GO:0000785 Component Chromatin IDA 19907496
GO:0001741 Component XY body IEA
GO:0002244 Process Hematopoietic progenitor cell differentiation IEA
GO:0004468 Function L-lysine N-acetyltransferase activity, acting on acetyl phosphate as donor IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
609353 27230 ENSG00000171320
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q56NI9
Protein name N-acetyltransferase ESCO2 (EC 2.3.1.-) (Establishment factor-like protein 2) (EFO2) (EFO2p) (hEFO2) (Establishment of cohesion 1 homolog 2) (ECO1 homolog 2)
Protein function Acetyltransferase required for the establishment of sister chromatid cohesion (PubMed:15821733, PubMed:15958495). Couples the processes of cohesion and DNA replication to ensure that only sister chromatids become paired together. In contrast to
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13878 zf-C2H2_3 374 413 zinc-finger of acetyl-transferase ESCO Domain
PF13880 Acetyltransf_13 529 597 ESCO1/2 acetyl-transferase Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed in fetal tissues. In adult, it is expressed in thymus, placenta and small intestine. {ECO:0000269|PubMed:15821733}.
Sequence
MAALTPRKRKQDSLKCDSLLHFTENLFPSPNKKHCFYQNSDKNEENLHCSQQEHFVLSAL
KTTEINRLPSANQGSPFKSALSTVSFYNQNKWYLNPLERKLIKESRSTCLKTNDEDKSFP
IVTEKMQGKPVCSKKNNKKPQKSLTAKYQPKYRHIKPVSRNSRNSKQNRVIYKPIVEKEN
NCHSAENNSNAPRVLSQKIKPQVTLQGGAAFFVRKKSSLRKSSLENEPSLGRTQKSKSEV
IEDSDVETVSEKKTFATRQVPKCLVLEEKLKIGLLSASSKNKEKLIKDSSDDRVSSKEHK
VDKNEAFSSEDSLGENKTISPKSTVYPIFSASSVNSKRSLGEEQFSVGSVNFMKQTNIQK
NTNTRDTSKKTKDQLIIDAGQKHFGATVCKSCGMIYTASNPEDEMQHVQHHHRFLEGIKY
VGWKKERVVAEFWDGKIVLVLPHDPSFAIKKVEDVQELVDNELGFQQVVPKCPNKIKTFL
FISDEKRVVGCLIAEPIKQAFRVLSEPIGPESPSSTECPRAWQCSDVPEPAVCGISRIWV
FRLKRRKRIARRLVDTLRNCFMFGCFLSTDEIAFSDPTPDGKLFATKYCNTPNFLVY
NFN
S
Sequence length 601
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cell cycle   Establishment of Sister Chromatid Cohesion
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
10
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
ESCO2-related disorder Pathogenic rs80359852, rs80359846 RCV003398414
RCV003407350
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Juberg-Hayward syndrome Pathogenic; Likely pathogenic rs991672013, rs1804790650, rs768055962, rs2128951191, rs959080745, rs2128951110, rs80359848, rs80359849, rs80359852, rs1413591962, rs797045566, rs1208433027, rs2486628509, rs1262117826, rs80359859
View all (10 more)
RCV001328531
RCV005051412
RCV005040465
RCV005042571
RCV005042697
View all (20 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Roberts-SC phocomelia syndrome Pathogenic; Likely pathogenic rs991672013, rs1804790650, rs1804892169, rs768055962, rs1225195349, rs750842366, rs2128957692, rs2128951191, rs959080745, rs2128951110, rs80359848, rs80359868, rs80359849, rs1554554098, rs80359852
View all (30 more)
RCV005040191
RCV005051412
RCV005624481
RCV005040465
RCV005624483
View all (42 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CLEFT LIP/PALATE WITH ABNORMAL THUMBS AND MICROCEPHALY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hereditary breast ovarian cancer syndrome Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
KIDNEY NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Aortic Valve Stenosis Aortic Valve Sclerosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect HPO_DG
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorders Autism Spectrum Disorder BEFREE 28932960, 30640053, 31246379, 31485814
★☆☆☆☆
Found in Text Mining only
Brachycephaly Brachycephaly HPO_DG
★☆☆☆☆
Found in Text Mining only
Brachydactyly Brachydactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 19110721, 30947698, 32883354 Associate
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 31944408 Stimulate
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 35258173 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Squamous Cell Squamous cell carcinoma Pubtator 29749538 Associate
★☆☆☆☆
Found in Text Mining only