Gene Gene information from NCBI Gene database.
Entrez ID 154881
Gene name Potassium channel tetramerization domain containing 7
Gene symbol KCTD7
Synonyms (NCBI Gene)
CLN14EPM3
Chromosome 7
Chromosome location 7q11.21
Summary This gene encodes a member of the potassium channel tetramerization domain-containing protein family. Family members are identified on a structural basis and contain an amino-terminal domain similar to the T1 domain present in the voltage-gated potassium
SNPs SNP information provided by dbSNP.
25
SNP ID Visualize variation Clinical significance Consequence
rs139585796 C>T Likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs140932942 C>T Benign, conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs199624315 G>A,T Likely-pathogenic, uncertain-significance Missense variant, coding sequence variant
rs200652879 C>G,T Likely-pathogenic Missense variant, coding sequence variant
rs201296399 A>G Likely-pathogenic, uncertain-significance Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
211
miRTarBase ID miRNA Experiments Reference
MIRT051052 hsa-miR-17-5p CLASH 23622248
MIRT048921 hsa-miR-92a-3p CLASH 23622248
MIRT044637 hsa-miR-320a CLASH 23622248
MIRT620881 hsa-miR-548c-3p HITS-CLIP 23824327
MIRT620880 hsa-miR-1295b-5p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
16
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 22748208, 32296183, 38225382
GO:0005737 Component Cytoplasm IDA 22748208
GO:0005737 Component Cytoplasm IEA
GO:0005829 Component Cytosol IEA
GO:0005829 Component Cytosol TAS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
611725 21957 ENSG00000243335
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96MP8
Protein name BTB/POZ domain-containing protein KCTD7
Protein function May be involved in the control of excitability of cortical neurons.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02214 BTB_2 53 141 BTB/POZ domain Domain
Sequence
MVVVTGREPDSRRQDGAMSSSDAEDDFLEPATPTATQAGHALPLLPQEFPEVVPLNIGGA
HFTTRLSTLRCYEDTMLAAMFSGRHYIPTDSEGRYFIDRDGTHFGDVLNFLRSGDLPPRE
RVRAVYKEAQYYAIGPLLEQL
ENMQPLKGEKVRQAFLGLMPYYKDHLERIVEIARLRAVQ
RKARFAKLKVCVFKEEMPITPYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVAD
VYDLLHCLVTDLSAQGLTVDHQCIGVCDKHLVNHYYCKRPIYEFKITWW
Sequence length 289
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Neddylation
Antigen processing: Ubiquitination & Proteasome degradation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
15
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Epilepsy, progressive myoclonic, 3, with intracellular inclusions Likely pathogenic; Pathogenic rs387907246 RCV000030608
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Epileptic encephalopathy Likely pathogenic rs1584399108 RCV001003965
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Intellectual disability Likely pathogenic; Pathogenic rs750811871 RCV005625595
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
KCTD7-related disorder Likely pathogenic; Pathogenic rs141191660 RCV004754810
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CLN14 DISEASE Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DISORDER OF DEVELOPMENT OR MORPHOGENESIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
EPILEPSY, PROGRESSIVE MYOCLONIC 3 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
EPILEPSY, PROGRESSIVE MYOCLONIC, 3, WITH OR WITHOUT INTRACELLULAR INCLUSIONS CTD, HPO
CTD, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Ataxia Ataxia Pubtator 25060828 Associate
★☆☆☆☆
Found in Text Mining only
Bipolar Disorder Bipolar Disorder BEFREE 31197948
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy BEFREE 30500434
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Cerebral atrophy Cerebral Atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Cerebrovascular accident Stroke BEFREE 31813354
★☆☆☆☆
Found in Text Mining only
Deglutition Disorders Dysphagia CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Delirium, Dementia, Amnestic, Cognitive Disorders Delirium, Dementia, Amnestic, Cognitive Disorders BEFREE 31197948
★☆☆☆☆
Found in Text Mining only
Dementia Dementia HPO_DG
★☆☆☆☆
Found in Text Mining only