Gene Gene information from NCBI Gene database.
Entrez ID 1509
Gene name Cathepsin D
Gene symbol CTSD
Synonyms (NCBI Gene)
CLN10CPSDHEL-S-130P
Chromosome 11
Chromosome location 11p15.5
Summary This gene encodes a member of the A1 family of peptidases. The encoded preproprotein is proteolytically processed to generate multiple protein products. These products include the cathepsin D light and heavy chains, which heterodimerize to form the mature
SNPs SNP information provided by dbSNP.
19
SNP ID Visualize variation Clinical significance Consequence
rs121912789 A>T Pathogenic Coding sequence variant, missense variant
rs121912790 C>G Pathogenic Coding sequence variant, missense variant
rs140238987 C>A,G,T Likely-benign, conflicting-interpretations-of-pathogenicity, benign, uncertain-significance Coding sequence variant, synonymous variant
rs140563067 C>T Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs147800688 C>T Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
595
miRTarBase ID miRNA Experiments Reference
MIRT018513 hsa-miR-335-5p Microarray 18185580
MIRT029858 hsa-miR-26b-5p Microarray 19088304
MIRT051277 hsa-miR-16-5p CLASH 23622248
MIRT042779 hsa-miR-339-5p CLASH 23622248
MIRT042362 hsa-miR-484 CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
9
Transcription factor Regulation Reference
ARNT Unknown 9611253
BRCA1 Repression 11244506
ESR1 Unknown 10037443;19569049
ESR2 Unknown 10037443
MYCN Activation 18566016
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
49
GO ID Ontology Definition Evidence Reference
GO:0000045 Process Autophagosome assembly IEA
GO:0004175 Function Endopeptidase activity IEA
GO:0004190 Function Aspartic-type endopeptidase activity IBA
GO:0004190 Function Aspartic-type endopeptidase activity IEA
GO:0004190 Function Aspartic-type endopeptidase activity TAS 3927292
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
116840 2529 ENSG00000117984
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P07339
Protein name Cathepsin D (EC 3.4.23.5) [Cleaved into: Cathepsin D light chain; Cathepsin D heavy chain]
Protein function Acid protease active in intracellular protein breakdown. Plays a role in APP processing following cleavage and activation by ADAM30 which leads to APP degradation (PubMed:27333034). Involved in the pathogenesis of several diseases such as breast
PDB 1LYA , 1LYB , 1LYW , 4OBZ , 4OC6 , 4OD9
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07966 A1_Propeptide 21 50 A1 Propeptide Motif
PF00026 Asp 78 409 Eukaryotic aspartyl protease Family
Tissue specificity TISSUE SPECIFICITY: Expressed in the aorta extracellular space (at protein level) (PubMed:20551380). Expressed in liver (at protein level) (PubMed:1426530). {ECO:0000269|PubMed:1426530, ECO:0000269|PubMed:20551380}.
Sequence
Sequence length 412
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Sphingolipid signaling pathway
Autophagy - animal
Lysosome
Apoptosis
Estrogen signaling pathway
Tuberculosis
Diabetic cardiomyopathy
  Collagen degradation
Metabolism of Angiotensinogen to Angiotensins
MHC class II antigen presentation
Neutrophil degranulation
Estrogen-dependent gene expression
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
25
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Exaggerated startle response Likely pathogenic rs730882208 RCV000162114
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Neuronal ceroid lipofuscinosis Pathogenic; Likely pathogenic rs752612332, rs2133659840, rs2133657906, rs2133657826, rs766300396, rs1845850847, rs774781089, rs2493825774, rs35855065, rs1845759700, rs1466648123, rs2493816889, rs2493823481, rs2493823533, rs2493834457
View all (17 more)
RCV001999994
RCV002032208
RCV001979146
RCV002000048
RCV002020530
View all (29 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Neuronal ceroid lipofuscinosis 10 Pathogenic; Likely pathogenic rs2133668728, rs797045137, rs121912789, rs121912790, rs786205105, rs752612332 RCV001780593
RCV000190882
RCV000019134
RCV000019135
RCV000019136
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Severe microlissencephaly Likely pathogenic rs730882208 RCV000162114
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMERS DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMYOTROPHIC LATERAL SCLEROSIS 1 CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTHRITIS, RHEUMATOID CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, HEPATOCELLULAR CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Coronary Syndrome Coronary Syndrome BEFREE 30306071
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 10619912, 16979516, 22824147, 26264650
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 18396902
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Of Esophagus Esophageal Cancer BEFREE 18396902
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 22761399, 22824147
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of prostate Prostate adenocarcinoma BEFREE 8875196
★☆☆☆☆
Found in Text Mining only
Adenoid Cystic Carcinoma Adenocarcinoma LHGDN 11780226
★☆☆☆☆
Found in Text Mining only
Adenoid Cystic Carcinoma Adenocarcinoma BEFREE 30430081
★☆☆☆☆
Found in Text Mining only
Adult Fanconi syndrome Fanconi syndrome BEFREE 18174267
★☆☆☆☆
Found in Text Mining only
Aggressive Periodontitis Aggressive Periodontitis BEFREE 15081423
★☆☆☆☆
Found in Text Mining only