Gene Gene information from NCBI Gene database.
Entrez ID 148479
Gene name PHD finger protein 13
Gene symbol PHF13
Synonyms (NCBI Gene)
PHF5SPOC1
Chromosome 1
Chromosome location 1p36.31
miRNA miRNA information provided by mirtarbase database.
569
miRTarBase ID miRNA Experiments Reference
MIRT023425 hsa-miR-30b-5p Sequencing 20371350
MIRT049465 hsa-miR-92a-3p CLASH 23622248
MIRT655189 hsa-miR-5088-5p HITS-CLIP 23824327
MIRT655188 hsa-miR-26a-1-3p HITS-CLIP 23824327
MIRT655187 hsa-miR-26a-2-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
19
GO ID Ontology Definition Evidence Reference
GO:0000278 Process Mitotic cell cycle IMP 19638409
GO:0003682 Function Chromatin binding IBA
GO:0003682 Function Chromatin binding IDA 19638409
GO:0005515 Function Protein binding IPI 23034801
GO:0005634 Component Nucleus IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
620054 22983 ENSG00000116273
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q86YI8
Protein name PHD finger protein 13 (Survival time-associated PHD finger protein in ovarian cancer 1) (SPOC1)
Protein function Modulates chromatin structure and DNA damage response by regulating key determinants of chromatin compaction and DNA damage response (PubMed:19638409). Binds H3K4me3-containing chromatin and promotes DNA condensation by recruiting corepressors s
PDB 3O70 , 3O7A
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00628 PHD 234 280 PHD-finger Domain
Sequence
MDSDSCAAAFHPEEYSPSCKRRRTVEDFNKFCTFVLAYAGYIPYPKEELPLRSSPSPANS
TAGTIDSDGWDAGFSDIASSVPLPVSDRCFSHLQPTLLQRAKPSNFLLDRKKTDKLKKKK
KRKRRDSDAPGKEGYRGGLLKLEAADPYVETPTSPTLQDIPQAPSDPCSGWDSDTPSSGS
CATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGNDEDIMVDSDDDSWDLVTCFCMKP
FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS
KFDIRRSNRSRTGSRKLFLD
Sequence length 300
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
4
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CARDIOVASCULAR DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHRONIC OBSTRUCTIVE PULMONARY DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hepatocellular carcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Uterine corpus endometrial carcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alzheimer disease, familial, type 3 Alzheimer disease BEFREE 24278021
★☆☆☆☆
Found in Text Mining only
Carcinoma Carcinoma BEFREE 15825179
★☆☆☆☆
Found in Text Mining only
Carcinoma, Ovarian Epithelial Ovarian Epithelial carcinoma BEFREE 15825179
★☆☆☆☆
Found in Text Mining only
Cardiovascular Diseases Cardiovascular Diseases GWASCAT_DG 30595370
★☆☆☆☆
Found in Text Mining only
Epithelial ovarian cancer Ovarian cancer BEFREE 15825179
★☆☆☆☆
Found in Text Mining only
Lupus Erythematosus Systemic Systemic lupus erythematosus Pubtator 37841281 Associate
★☆☆☆☆
Found in Text Mining only
Malignant neoplasm of ovary Ovarian cancer BEFREE 15825179
★☆☆☆☆
Found in Text Mining only
Neoplasms Neoplasms BEFREE 15825179
★☆☆☆☆
Found in Text Mining only
ovarian neoplasm Ovarian neoplasm BEFREE 15825179
★☆☆☆☆
Found in Text Mining only
Pancreatic Neoplasms Pancreatic neoplasm Pubtator 35597793 Associate
★☆☆☆☆
Found in Text Mining only