Gene Gene information from NCBI Gene database.
Entrez ID 147007
Gene name Vacuolar ATPase assembly factor VMA12
Gene symbol VMA12
Synonyms (NCBI Gene)
C17orf32CDG2PTMEM199VPH2
Chromosome 17
Chromosome location 17q11.2
miRNA miRNA information provided by mirtarbase database.
237
miRTarBase ID miRNA Experiments Reference
MIRT043870 hsa-miR-378a-3p CLASH 23622248
MIRT724113 hsa-miR-6736-3p HITS-CLIP 19536157
MIRT724112 hsa-miR-4530 HITS-CLIP 19536157
MIRT724111 hsa-miR-338-3p HITS-CLIP 19536157
MIRT724110 hsa-miR-877-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
20
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 25416956, 32296183
GO:0005764 Component Lysosome IEA
GO:0005783 Component Endoplasmic reticulum IDA 28296633
GO:0005783 Component Endoplasmic reticulum IEA
GO:0005789 Component Endoplasmic reticulum membrane IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
616815 18085 ENSG00000244045
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8N511
Protein name Vacuolar ATPase assembly protein VMA12 (Transmembrane protein 199)
Protein function Accessory component of the proton-transporting vacuolar (V)-ATPase protein pump involved in intracellular iron homeostasis. In aerobic conditions, required for intracellular iron homeostasis, thus triggering the activity of Fe(2+) prolyl hydroxy
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF11712 Vma12 78 204 Endoplasmic reticulum-based factor for assembly of V-ATPase Family
Sequence
Sequence length 208
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
17
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Congenital disorders of glycosylation type II Likely pathogenic; Pathogenic rs782531869, rs369488804 RCV000210790
RCV000210814
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
TMEM199-CDG Likely pathogenic; Pathogenic rs782531869, rs369488804, rs869025586, rs869025587 RCV000208697
RCV000208686
RCV000208624
RCV000208655
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
TMEM199-related disorder Likely pathogenic; Pathogenic rs782531869 RCV003407721
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Breast Carcinoma Breast Carcinoma BEFREE 20158880
★☆☆☆☆
Found in Text Mining only
Congenital disorder of glycosylation type 1s Congenital disorder of glycosylation BEFREE 29321044
★☆☆☆☆
Found in Text Mining only
CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIp Congenital disorder of glycosylation UNIPROT_DG 26833330
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIp Congenital disorder of glycosylation ORPHANET_DG 26833330
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIp Congenital disorder of glycosylation GENOMICS_ENGLAND_DG 26833330
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIp Congenital disorder of glycosylation CTD_human_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IIp Congenital disorder of glycosylation CLINVAR_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Congenital Disorders of Glycosylation Congenital disorder of glycosylation Pubtator 26833330, 29759592 Associate
★☆☆☆☆
Found in Text Mining only
Fatty Liver Fatty liver Pubtator 26833330, 29321044 Associate
★☆☆☆☆
Found in Text Mining only
Fatty Liver Fatty Liver HPO_DG
★☆☆☆☆
Found in Text Mining only