Gene Gene information from NCBI Gene database.
Entrez ID 146059
Gene name Codanin 1
Gene symbol CDAN1
Synonyms (NCBI Gene)
CDA1CDAICDAN1ADLTPRO1295
Chromosome 15
Chromosome location 15q15.2
Summary This gene encodes a protein that appears to play a role in nuclear envelope integrity, possibly related to microtubule attachments. Mutations in this gene cause congenital dyserythropoietic anemia type I, a disease resulting in morphological and functiona
SNPs SNP information provided by dbSNP.
15
SNP ID Visualize variation Clinical significance Consequence
rs80338694 G>A,C Likely-pathogenic, pathogenic Coding sequence variant, upstream transcript variant, missense variant, genic upstream transcript variant, non coding transcript variant, synonymous variant
rs80338696 G>A Likely-pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs80338697 G>A,C,T Pathogenic Coding sequence variant, missense variant, non coding transcript variant, genic downstream transcript variant, synonymous variant
rs80338699 G>A Pathogenic Non coding transcript variant, coding sequence variant, missense variant, genic downstream transcript variant
rs113313967 C>T Pathogenic Intron variant
miRNA miRNA information provided by mirtarbase database.
159
miRTarBase ID miRNA Experiments Reference
MIRT047385 hsa-miR-34a-5p CLASH 23622248
MIRT037638 hsa-miR-744-5p CLASH 23622248
MIRT876699 hsa-miR-106a CLIP-seq
MIRT876700 hsa-miR-106b CLIP-seq
MIRT876701 hsa-miR-1200 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
E2F1 Unknown 19336738
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
15
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 22407294
GO:0005634 Component Nucleus IBA
GO:0005634 Component Nucleus IDA 21364188, 22407294
GO:0005634 Component Nucleus IEA
GO:0005737 Component Cytoplasm IDA 22407294
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607465 1713 ENSG00000140326
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8IWY9
Protein name Codanin-1
Protein function May act as a negative regulator of ASF1 in chromatin assembly.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15296 Codanin-1_C 784 899 Codanin-1 C-terminus Family
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed. Isoform 3 is not found in erythroid cells. {ECO:0000269|PubMed:12434312}.
Sequence
MAAVLESLLREEVSVAAVVRWIARSTQGSEDNAGEAAALSSLRALRKEFVPFLLNFLREQ
SSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGG
RRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPP
VGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGL
PPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPADPARVSSRQ
RLELVALVYSSCIAENLVPNLFLELFFVFQLLTARRMVTAKDSDPELSPAVLDSLESPLF
QSIHDCVFFAVQVLECHFQVLSNLDKGTLKLLAENERLLCFSPALQGRLRAAYEGSVAKV
SLVMPPSTQAVSFQPETDNRANFSSDRAFHTFKKQRDVFYEVLREWEDHHEEPGWDFEKG
LGSRIRAMMGQLSAACSHSHFVRLFQKQLLQMCQSPGGAGGTVLGEAPDVLSMLGADKLG
RLWRLQERLMAPQSSGGPCPPPTFPGCQGFFRDFILSASSFQFNQHLMDSLSLKIQELNG
LALPQHEPNDEDGESDVDWQGERKQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTGELQ
DSILALRSQVPPVLDVRTLLQRGLQARRAVLTVPWLVEFLSFADHVVPLLEYYRDIFTLL
LRLHRSLVLSQESEGKMCFLNKLLLLAVLGWLFQIPTVPEDLFFLEEGPSYAFEVDTVAP
EHGLDNAPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGGFMRKITPTTTTSLGAQPS
QTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVRQAESLLQE
Q
LVTQGEEGGDPAQLLEILCSQLCPHGAQALALGREFCQRKSPGAVRALLPEETPAAVLSS
AENIAVGLATEKACAWLSANITALIRREVKAAVSRTLRAQGPEPAARGERRGCSRACEHH
APLPSHLISEIKDVLSLAVGPRDPDEGVSPEHLEQLLGQLGQTLRCRQFLCPPAEQHLAK
CSVELASLLVADQIPILGPPAQYRLERGQARRLLHMLLSLWKEDFQGPVPLQLLLSPRNV
GLLADTRPREWDLLLFLLRELVEKGLMGRMEIEACLGSLHQAQWPGDFAEELATLSNLFL
AEPHLPEPQLRACELVQPNRGTVLAQS
Sequence length 1227
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
26
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Anemia, congenital dyserythropoietic, type 1a Pathogenic; Likely pathogenic rs375339408, rs778822407, rs2140471687, rs2140505826, rs2506101144, rs80338697, rs80338699, rs120074166, rs120074167, rs2506131342, rs2506067560, rs778173860, rs2506137543, rs2506092231, rs1383200463
View all (3 more)
RCV005009585
RCV003764481
RCV001780464
RCV001780465
RCV002280806
View all (13 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
CDAN1-related disorder Likely pathogenic; Pathogenic rs80338694 RCV004755746
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital dyserythropoietic anemia, type I Likely pathogenic; Pathogenic rs80338697, rs80338699, rs120074166, rs120074167, rs120074168, rs120074169, rs80338694, rs80338696, rs140334403 RCV000020956
RCV000020959
RCV000003328
RCV000020953
RCV000003330
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Uterine corpus endometrial carcinoma Pathogenic rs145148854 RCV005927014
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Uncertain significance; Conflicting classifications of pathogenicity; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenocortical carcinoma, hereditary Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, CONGENITAL DYSERYTHROPOIETIC, TYPE IA Disgenet, HPO
Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, DYSERYTHROPOIETIC, CONGENITAL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
alpha-Thalassemia alpha Thalassemia BEFREE 12071943
★☆☆☆☆
Found in Text Mining only
Anemia Anemia Pubtator 33401150 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Dyserythropoietic Congenital Congenital dyserythropoietic anemia Pubtator 12434312, 16098079, 16141353, 19336738, 22407294, 22504250, 23716552, 29599085, 32160409, 32239177, 32293259, 32518175, 33075436, 33121234, 33401150 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Dyserythropoietic Congenital Congenital dyserythropoietic anemia Pubtator 9345103 Stimulate
★☆☆☆☆
Found in Text Mining only
Anemia Hemolytic Hemolytic anemia Pubtator 33401150 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Macrocytic Macrocytic anemia Pubtator 29599085 Associate
★☆☆☆☆
Found in Text Mining only
Anemia, Hemolytic, Congenital Anemia BEFREE 23605369
★☆☆☆☆
Found in Text Mining only
Anemia, Macrocytic Anemia BEFREE 19336738, 27206021, 29599085, 9255198
★☆☆☆☆
Found in Text Mining only
Anemia, Neonatal Anemia BEFREE 9255198
★☆☆☆☆
Found in Text Mining only
Angioid Streaks Angioid streaks BEFREE 18081704
★☆☆☆☆
Found in Text Mining only