Gene Gene information from NCBI Gene database.
Entrez ID 1438
Gene name Colony stimulating factor 2 receptor subunit alpha
Gene symbol CSF2RA
Synonyms (NCBI Gene)
CD116CDw116CSF2RCSF2RAXCSF2RAYCSF2RXCSF2RYGM-CSF-R-alphaGMCSFRGMCSFR-alphaGMRGMR-alphaSMDP4alphaGMR
Chromosome X|Y
Chromosome location X;Y
Summary The protein encoded by this gene is the alpha subunit of the heterodimeric receptor for colony stimulating factor 2, a cytokine which controls the production, differentiation, and function of granulocytes and macrophages. The encoded protein is a member o
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs137852353 G>A,C Pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs140664183 C>T Conflicting-interpretations-of-pathogenicity Intron variant, coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
91
miRTarBase ID miRNA Experiments Reference
MIRT911711 hsa-miR-3620 CLIP-seq
MIRT911712 hsa-miR-526b CLIP-seq
MIRT911713 hsa-miR-578 CLIP-seq
MIRT911714 hsa-miR-106a CLIP-seq
MIRT911715 hsa-miR-106b CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
CEBPA Unknown 7565736
SPI1 Unknown 7565736
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
23
GO ID Ontology Definition Evidence Reference
GO:0004896 Function Cytokine receptor activity IEA
GO:0004903 Function Growth hormone receptor activity IBA
GO:0005515 Function Protein binding IPI 25416956
GO:0005576 Component Extracellular region IEA
GO:0005829 Component Cytosol IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
306250 N/A HGNC
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P15509
Protein name Granulocyte-macrophage colony-stimulating factor receptor subunit alpha (GM-CSF-R-alpha) (GMCSFR-alpha) (GMR-alpha) (CDw116) (CD antigen CD116)
Protein function Low affinity receptor for granulocyte-macrophage colony-stimulating factor. Transduces a signal that results in the proliferation, differentiation, and functional activation of hematopoietic cells.
PDB 4NKQ , 4RS1
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18611 IL3Ra_N 35 112 IL-3 receptor alpha chain N-terminal domain Domain
PF09240 IL6Ra-bind 123 215 Interleukin-6 receptor alpha chain, binding Domain
Sequence
MLLLVTSLLLCELPHPAFLLIPEKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKC
FLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEVHVNTSQRGFQQKLLYP
NSGREGTA
AQNFSCFIYNADLMNCTWARGPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHL
DNLSGLTSRNYFLVNGTSREIGIQFFDSLLDTKKI
ERFNPPSNVTVRCNTTHCLVRWKQP
RTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKHSVKIRAAD
VRILNWSSWSEAIEFGSDDGNLGSVYIYVLLIVGTLVCGIVLGFLFKRFLRIQRLFPPVP
QIKDKLNDNHEVEDEIIWEEFTPEEGKGYREEVLTVKEIT
Sequence length 400
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cytokine-cytokine receptor interaction
JAK-STAT signaling pathway
Hematopoietic cell lineage
Pathways in cancer
  Interleukin-3, Interleukin-5 and GM-CSF signaling
RAF/MAP kinase cascade
Surfactant metabolism
Defective CSF2RB causes pulmonary surfactant metabolism dysfunction 5 (SMDP5)
Defective CSF2RA causes pulmonary surfactant metabolism dysfunction 4 (SMDP4)
Interleukin receptor SHC signaling
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
20
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
CSF2RA-related disorder Likely pathogenic; Pathogenic rs2148504379, rs149151916 RCV004752118
RCV003394301
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Surfactant metabolism dysfunction, pulmonary, 4 Pathogenic; Likely pathogenic rs756203389, rs2148312047, rs2148417003, rs2148504379, rs149151916, rs2092302661, rs2091060104, rs753455319, rs1196937077, rs142796603, rs2522384987, rs137852353, rs750023118, rs2521947117, rs2522387231
View all (5 more)
RCV001388457
RCV001382275
RCV001388704
RCV001970797
RCV001934649
View all (16 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Thyroid cancer, nonmedullary, 1 Likely pathogenic rs2148504379 RCV005925429
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colorectal cancer Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 27209355
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 21557945 Inhibit
★☆☆☆☆
Found in Text Mining only
Asthma Asthma Pubtator 19213775 Stimulate
★☆☆☆☆
Found in Text Mining only
Asthma Asthma BEFREE 9155834
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 31635541 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 9845545 Inhibit
★☆☆☆☆
Found in Text Mining only
Cerebral Infarction Ischemic stroke Pubtator 22365286 Associate
★☆☆☆☆
Found in Text Mining only
Cholangiocarcinoma Cholangiocarcinoma Pubtator 36883059 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Chronic Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 24836891
★☆☆☆☆
Found in Text Mining only
Colitis Ulcerative Ulcerative colitis Pubtator 21557945 Inhibit
★☆☆☆☆
Found in Text Mining only