Gene Gene information from NCBI Gene database.
Entrez ID 142
Gene name Poly(ADP-ribose) polymerase 1
Gene symbol PARP1
Synonyms (NCBI Gene)
ADPRTADPRT 1ADPRT1ARTD1PARPPARP-1PARSPPOLPoly-PARPpADPRT-1
Chromosome 1
Chromosome location 1q42.12
Summary This gene encodes a chromatin-associated enzyme, poly(ADP-ribosyl)transferase, which modifies various nuclear proteins by poly(ADP-ribosyl)ation. The modification is dependent on DNA and is involved in the regulation of various important cellular processe
miRNA miRNA information provided by mirtarbase database.
572
miRTarBase ID miRNA Experiments Reference
MIRT019791 hsa-miR-375 qRT-PCR;Microarray 20584986
MIRT030724 hsa-miR-21-5p Microarray 18591254
MIRT052650 hsa-miR-223-3p Luciferase reporter assayMicroarrayqRT-PCRWestern blot 23757351
MIRT046137 hsa-miR-30b-5p CLASH 23622248
MIRT046091 hsa-miR-125b-5p CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
4
Transcription factor Regulation Reference
EP300 Unknown 17065349
ETS1 Activation 11973649;24448423
ETS1 Repression 10435618
YY1 Unknown 9367892
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
163
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 15607977, 22464733
GO:0000122 Process Negative regulation of transcription by RNA polymerase II TAS
GO:0000723 Process Telomere maintenance TAS 25749521
GO:0000724 Process Double-strand break repair via homologous recombination IDA 18417535, 26811421, 35597237
GO:0000781 Component Chromosome, telomeric region HDA 19135898
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
173870 270 ENSG00000143799
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P09874
Protein name Poly [ADP-ribose] polymerase 1 (PARP-1) (EC 2.4.2.30) (ADP-ribosyltransferase diphtheria toxin-like 1) (ARTD1) (DNA ADP-ribosyltransferase PARP1) (EC 2.4.2.-) (NAD(+) ADP-ribosyltransferase 1) (ADPRT 1) (Poly[ADP-ribose] synthase 1) (Protein poly-ADP-ribo
Protein function Poly-ADP-ribosyltransferase that mediates poly-ADP-ribosylation of proteins and plays a key role in DNA repair (PubMed:17177976, PubMed:18055453, PubMed:18172500, PubMed:19344625, PubMed:19661379, PubMed:20388712, PubMed:21680843, PubMed:2258226
PDB 1UK0 , 1UK1 , 1WOK , 2COK , 2CR9 , 2CS2 , 2DMJ , 2JVN , 2L30 , 2L31 , 2N8A , 2RCW , 2RD6 , 2RIQ , 3GJW , 3GN7 , 3L3L , 3L3M , 3OD8 , 3ODA , 3ODC , 3ODE , 4AV1 , 4DQY , 4GV7 , 4HHY , 4HHZ , 4L6S , 4OPX , 4OQA , 4OQB , 4PJT , 4R5W , 4R6E , 4RV6 , 4UND , 4UXB , 4XHU , 4ZZZ , 5A00 , 5DS3 , 5HA9 , 5KPN , 5KPO , 5KPP , 5KPQ , 5WRQ , 5WRY , 5WRZ , 5WS0 , 5WS1
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00645 zf-PARP 12 89 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region Domain
PF00645 zf-PARP 116 199 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region Domain
PF08063 PADR1 280 331 PADR1 (NUC008) domain Domain
PF00533 BRCT 385 462 BRCA1 C Terminus (BRCT) domain Family
PF05406 WGR 553 633 WGR domain Domain
PF02877 PARP_reg 663 794 Poly(ADP-ribose) polymerase, regulatory domain Domain
PF00644 PARP 808 1007 Poly(ADP-ribose) polymerase catalytic domain Family
Sequence
MAESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKV
GHSIRHPDVEVDGFSELRWDDQQKVKKTA
EAGGVTGKGQDGIGSKAEKTLGDFAAEYAKS
NRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQ
LKGFSLLATEDKEALKKQL
PGVKSEGKRKGDEVDGVDEVAKKKSKKEKDKDSKLEKALKA
QNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALLPCEECSG
QLVFKSDAYYCTGDVTAWTKCMVKTQTPNRK
EWVTPKEFREISYLKKLKVKKQDRIFPPE
TSASVAATPPPSTASAPAAVNSSASADKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLT
GTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDV
SASTKSLQELFLAHILSP
WGAEVKAEPVEVVAPRGKSGAALSKKSKGQVKEEGINKSEKRMKLTLKGGAAVDPDSGLE
HSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVIGSNK
LEQMPSKEDAIEHFMKLYEEKTGNAWHSKNFTK
YPKKFYPLEIDYGQDEEAVKKLTVNPG
TKSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAV
SQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRG
GSDDSSKDPIDVNY
EKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIE
REGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADM
VSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSA
NISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKF
NFKTSLW
Sequence length 1014
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Base excision repair
NF-kappa B signaling pathway
Apoptosis
Necroptosis
Diabetic cardiomyopathy
  POLB-Dependent Long Patch Base Excision Repair
Downregulation of SMAD2/3:SMAD4 transcriptional activity
SUMOylation of DNA damage response and repair proteins
HDR through MMEJ (alt-NHEJ)
DNA Damage Recognition in GG-NER
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
66
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMERS DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANKYLOSING SPONDYLITIS AND OTHER INFLAMMATORY SPONDYLOPATHIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AORTIC ANEURYSM, ABDOMINAL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 29990873
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 27551000
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 25179837
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Of Esophagus Esophageal Cancer BEFREE 23757351, 29531462
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 19571039, 26898760, 27655641, 28363999, 29453076, 29667179
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 17283177
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma BEFREE 17283177
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 15940627, 27334689
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 28698968, 29636359
★☆☆☆☆
Found in Text Mining only
Adrenocortical Carcinoma Adrenocortical carcinoma Pubtator 34531868, 35848940 Associate
★☆☆☆☆
Found in Text Mining only