Gene Gene information from NCBI Gene database.
Entrez ID 1407
Gene name Cryptochrome circadian regulator 1
Gene symbol CRY1
Synonyms (NCBI Gene)
DSPDPHLL1
Chromosome 12
Chromosome location 12q23.3
Summary This gene encodes a flavin adenine dinucleotide-binding protein that is a key component of the circadian core oscillator complex, which regulates the circadian clock. This gene is upregulated by CLOCK/ARNTL heterodimers but then represses this upregulatio
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs184039278 T>C,G Risk-factor Missense variant, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
39
miRTarBase ID miRNA Experiments Reference
MIRT043195 hsa-miR-324-5p CLASH 23622248
MIRT911078 hsa-miR-299-5p CLIP-seq
MIRT911079 hsa-miR-3120-5p CLIP-seq
MIRT911080 hsa-miR-3152-3p CLIP-seq
MIRT911081 hsa-miR-3973 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
5
Transcription factor Regulation Reference
ARNTL Activation 22750052
ARNTL Unknown 17660446
CLOCK Activation 22750052
CLOCK Unknown 17660446
NPAS2 Unknown 17660446
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
76
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 12397359, 14672706, 15147242
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000166 Function Nucleotide binding IEA
GO:0003677 Function DNA binding IBA
GO:0003677 Function DNA binding TAS 9801304
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601933 2384 ENSG00000008405
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q16526
Protein name Cryptochrome-1
Protein function Transcriptional repressor which forms a core component of the circadian clock. The circadian clock, an internal time-keeping system, regulates various physiological processes through the generation of approximately 24 hour circadian rhythms in g
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00875 DNA_photolyase 5 170 DNA photolyase Domain
PF03441 FAD_binding_7 286 486 FAD binding domain of DNA photolyase Domain
Sequence
Sequence length 586
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Circadian rhythm  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
30
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia association; risk factor ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Attention deficit hyperactivity disorder association; risk factor ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
BIPOLAR DISORDER Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer association; risk factor ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Advanced Sleep Phase Syndrome Advanced Sleep Phase Syndrome CTD_human_DG
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety disorder Pubtator 35365695, 38102312 Associate
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety Disorder BEFREE 23951166
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety disorder Pubtator 35365695 Associate
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 26218278
★☆☆☆☆
Found in Text Mining only
Asthenozoospermia Asthenozoospermia Pubtator 35000095 Associate
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 26218278
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis Pubtator 40441253 Associate
★☆☆☆☆
Found in Text Mining only
Attention Deficit and Disruptive Behavior Disorders Attention deficit hyperactivity disorder Pubtator 31708917 Inhibit
★☆☆☆☆
Found in Text Mining only
Attention Deficit Disorder with Hyperactivity Attention deficit hyperactivity disorder Pubtator 30758328, 32538895 Associate
★☆☆☆☆
Found in Text Mining only