Gene Gene information from NCBI Gene database.
Entrez ID 140628
Gene name GATA binding protein 5
Gene symbol GATA5
Synonyms (NCBI Gene)
CHTD5GATASbB379O24.1
Chromosome 20
Chromosome location 20q13.33
Summary The protein encoded by this gene is a transcription factor that contains two GATA-type zinc fingers. The encoded protein is known to bind to hepatocyte nuclear factor-1alpha (HNF-1alpha), and this interaction is essential for cooperative activation of the
SNPs SNP information provided by dbSNP.
5
SNP ID Visualize variation Clinical significance Consequence
rs782051102 A>G Pathogenic Missense variant, coding sequence variant
rs782773387 C>G Likely-pathogenic Missense variant, coding sequence variant
rs1555896778 A>C Pathogenic Coding sequence variant, missense variant
rs1555896779 G>C Pathogenic Coding sequence variant, missense variant
rs1555897088 A>C Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
28
miRTarBase ID miRNA Experiments Reference
MIRT018574 hsa-miR-335-5p Microarray 18185580
MIRT1012726 hsa-miR-1293 CLIP-seq
MIRT1012727 hsa-miR-3607-5p CLIP-seq
MIRT1012728 hsa-miR-3622a-5p CLIP-seq
MIRT1012729 hsa-miR-3689d CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
USF1 Activation 22625849
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
62
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA
GO:0000785 Component Chromatin IEA
GO:0000785 Component Chromatin ISA
GO:0000785 Component Chromatin ISS
GO:0000976 Function Transcription cis-regulatory region binding IDA 9566909
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
611496 15802 ENSG00000130700
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BWX5
Protein name Transcription factor GATA-5 (GATA-binding factor 5)
Protein function Transcription factor required during cardiovascular development (PubMed:23289003). Plays an important role in the transcriptional program(s) that underlies smooth muscle cell diversity (By similarity). Binds to the functionally important CEF-1 n
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05349 GATA-N 1 176 GATA-type transcription activator, N-terminal Family
PF00320 GATA 189 223 GATA zinc finger Domain
PF00320 GATA 243 277 GATA zinc finger Domain
Sequence
Sequence length 397
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Factors involved in megakaryocyte development and platelet production
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
40
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Congenital heart defects, multiple types, 5 Pathogenic rs782051102, rs1555896779, rs1555896778, rs1555897088 RCV000590860
RCV000590866
RCV000590855
RCV000590859
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Aortic valve disease 1 Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Arterial dissection Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION, FAMILIAL 1 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 22028801
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Of Esophagus Esophageal Cancer BEFREE 16823849
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 25759530
★☆☆☆☆
Found in Text Mining only
Aneurysm of aortic arch Aneurysm Of Aortic Arch HPO_DG
★☆☆☆☆
Found in Text Mining only
Aortic coarctation Aortic Coarctation BEFREE 24796370
★☆☆☆☆
Found in Text Mining only
Aortic coarctation Aortic Coarctation HPO_DG
★☆☆☆☆
Found in Text Mining only
Aortic valve calcification Aortic valve calcification ORPHANET_DG 24638895
★☆☆☆☆
Found in Text Mining only
Aortic valve calcification Aortic valve calcification HPO_DG
★☆☆☆☆
Found in Text Mining only
Aortic Valve Disease 1 Aortic valve calcification ORPHANET_DG 24638895
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Aortic valve disorder Aortic Valve Disease ORPHANET_DG 24638895
★☆☆☆☆
Found in Text Mining only